Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,331,085 – 2,331,180 |
Length | 95 |
Max. P | 0.903195 |
Location | 2,331,085 – 2,331,180 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 81.60 |
Mean single sequence MFE | -14.43 |
Consensus MFE | -9.44 |
Energy contribution | -10.88 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.07 |
Mean z-score | -2.22 |
Structure conservation index | 0.65 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.903195 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2331085 95 + 22407834 ACCUUGCUCUCCUAACACACA------CACACAUGUGGGCCCAAACCCAAAACGAAACCGAAACGCACACCAUCACAAUCCAAUAACAAAGCGGUGGGCAU ....(((((.((.........------........((((......))))...((....))................................)).))))). ( -14.70) >DroSec_CAF1 37846 85 + 1 ACCUUGCUCUCCUAACACACAC----ACACACAUGCGUGCCCAAACCCA------------AACGCACACCAACGCAAUCCAAUAACAAAGCAGUGGGCAU ....(((...............----.......(((((...........------------.)))))..(((..((..............))..)))))). ( -11.64) >DroSim_CAF1 37865 83 + 1 ACCUUGCUCUCCUAACACACA------CACACAUGCGUGCCCAAACCCA------------AACGCACACCAACGCAAUCCAAUAACAAAGCAGUGGGCAU ....(((..............------......(((((...........------------.)))))..(((..((..............))..)))))). ( -11.64) >DroEre_CAF1 42753 75 + 1 ACCUUGCUCUCCUAACACAC--------ACACAUGCGUGCCCGAACU------------------CACACCAUCGCAAUCCAGUAACAAAGCGGUGGGCAU ....................--------....(((((((........------------------))).(((((((..............))))))))))) ( -15.24) >DroYak_CAF1 38773 83 + 1 ACCUUGCUCCCCUAACACACACACACACACACAUGCGUGGCCAAACC------------------CACACCAUCGCAAUCCAGUAACAAAGCGGUGGGCAU ................................((((((((......)------------------))).(((((((..............))))))))))) ( -18.94) >consensus ACCUUGCUCUCCUAACACACA______CACACAUGCGUGCCCAAACCCA____________AACGCACACCAUCGCAAUCCAAUAACAAAGCGGUGGGCAU ................................((((((((........................)))).(((((((..............))))))))))) ( -9.44 = -10.88 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:17 2006