Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,325,555 – 2,325,648 |
Length | 93 |
Max. P | 0.671700 |
Location | 2,325,555 – 2,325,648 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 72.04 |
Mean single sequence MFE | -28.63 |
Consensus MFE | -13.91 |
Energy contribution | -15.97 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.16 |
Mean z-score | -1.69 |
Structure conservation index | 0.49 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.671700 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2325555 93 - 22407834 ------UUGGUUGAUGG--GGAGGGGAAAUGCAGGCGGGAAGCGAUUUCAAGCUUCUGGUUUUCGCAUUUCGCAUUUGACUUGCAGCUUUCCCAUGGAGCU ------..(.((.((((--(((((.(((((((((((.((((((........)))))).))))..)))))))(((.......)))..))))))))).)).). ( -40.10) >DroVir_CAF1 62756 89 - 1 ---AA-AUGGUGGU-U--AUGUCAAGAAAAGCGCGCUAGAAAACAUUUCAACCUUCUGCCU----CGACUCGCAUUUGACUUGCAGCUUU-GAGUCAAGAU ---..-...(((((-(--..(...((((.((....)).(((.....)))....))))..).----.))).))).((((((((........-)))))))).. ( -13.30) >DroSim_CAF1 32272 95 - 1 ------UUGGAGGGUGGGGGGAGGGGAACUGCAGGCGGGAAGCGAUUUCAAGCUUCUGGUUUUCGCAUUUCGCAUUUGACUUGCAGCUUUCCCAUGCAGCU ------.....((.((.(((((((((((.(((((((.((((((........)))))).))))..))).)))(((.......)))..))))))).).)).)) ( -33.70) >DroEre_CAF1 32576 91 - 1 ------UCUAU--UUUG--GGAGGGGAAAUGCAGGCGGGAAGCGAUUUCAAGCUUCUGGUUUUCGCAUUUCGCAUUUGACUUGCAGCUUUUCCAUGGAGCU ------((((.--..((--(((((((((((((((((.((((((........)))))).))))..)))))))(((.......)))..))))))))))))... ( -33.90) >DroYak_CAF1 33088 97 - 1 UUUUUUUUUUU--UUUG--GGUGGGGAAAUGCAGGCGGGAAGCGAUUUCAAGCUUCUGGUUUUCGCAUUUCGCAUUUGACUUGCAGCUUUCCCAUGGAGCU ........(((--..((--((..(((((((((((((.((((((........)))))).))))..)))))))(((.......)))..))..))))..))).. ( -33.00) >DroMoj_CAF1 47522 92 - 1 ACCAA-AUGGCGGU-U--AUGUCAAGAAAAGCGCGCUAGAAAACAUUUCAACCGUCUGCUU----CGACUCGCAUUUGACUUGCAGCUCU-CCGUGAAGCU .....-..((((((-(--...........((....)).(((.....)))))))))).((((----(.....(((.......))).((...-..))))))). ( -17.80) >consensus ______UUGGUGGUUUG__GGAGGGGAAAUGCAGGCGGGAAGCGAUUUCAAGCUUCUGGUUUUCGCAUUUCGCAUUUGACUUGCAGCUUUCCCAUGGAGCU .......................((((((.((..((.((((((........)))))).))...........(((.......))).))))))))........ (-13.91 = -15.97 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:16 2006