Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,322,627 – 2,322,730 |
Length | 103 |
Max. P | 0.653473 |
Location | 2,322,627 – 2,322,730 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 80.60 |
Mean single sequence MFE | -23.24 |
Consensus MFE | -11.09 |
Energy contribution | -11.49 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.09 |
Mean z-score | -2.14 |
Structure conservation index | 0.48 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.653473 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2322627 103 - 22407834 UUUAUUAAAUUAACUUUCUGGUCAGUAAACAUCUGAUGAGC-------UAUUUUAAGACCGAGAAAGUAAU-----UUCUUUUUGCAUGUACAAUAUGCAGAUUAAUAACUUAGC .(((((((....(((((((((((..((((..((....))..-------...)))).)))).)))))))...-----.....(((((((((...))))))))))))))))...... ( -22.50) >DroSec_CAF1 28773 102 - 1 UUUAUUAACUUAACUUACUGGUCAGUAAACAUCUGACGAGC-------UGUUUUAAGACCGAGAAAGUAAU-----UUCUU-UUGCAUGUACAAUAUGCAUACUAAUAACUUAGC .((((((.(((((..((((.(((((.......))))).)).-------))..)))))...((((((....)-----)))))-.(((((((...)))))))...))))))...... ( -23.10) >DroSim_CAF1 29370 102 - 1 UUUAUUAAAUUAACUUGCUGGUCAGUAAACAUCUGACGAGC-------UGUUUUAAGACCGAGAAAGUAAU-----UUCUC-UUGCAUGUACAAUAUGCAUACUAAUAACUUAGC ...........(((..(((.(((((.......))))).)))-------.)))(((((...((((((....)-----)))))-.(((((((...))))))).........))))). ( -27.10) >DroEre_CAF1 29617 114 - 1 UUUAUUAAAUUAACUUGCUGGUCAGUGGACAUCCGCCGAGCCUUCCUCCGCUUUAAGACCGAGAAAGUACUUGUAAUUCCU-UUGCAUGCACAAUAUGCAGACUAAUAACUUAGC .((((((.....((((.((((((.((((....)))).((((........))))...)))).)).))))............(-(((((((.....)))))))).))))))...... ( -24.60) >DroYak_CAF1 30178 98 - 1 UUUAUAAAAUUAACUUGCUGGUCAGUU-----------AGCCUUCCUUUCCUUGAACACGGAGAAAGUAAU-----UUCUU-CUGCAUGUACAGUAUGCAGACUUAUAACUUAGC .((((((.......((((((((.....-----------.)))....(((((........))))).))))).-----....(-(((((((.....)))))))).))))))...... ( -18.90) >consensus UUUAUUAAAUUAACUUGCUGGUCAGUAAACAUCUGACGAGC_______UGUUUUAAGACCGAGAAAGUAAU_____UUCUU_UUGCAUGUACAAUAUGCAGACUAAUAACUUAGC .((((((.....((((.((((((.................................)))).)).))))..............(((((((.....)))))))..))))))...... (-11.09 = -11.49 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:16 2006