Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,321,579 – 2,321,676 |
Length | 97 |
Max. P | 0.713145 |
Location | 2,321,579 – 2,321,676 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 75.37 |
Mean single sequence MFE | -22.40 |
Consensus MFE | -13.59 |
Energy contribution | -13.95 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.07 |
Mean z-score | -1.46 |
Structure conservation index | 0.61 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.713145 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2321579 97 + 22407834 UCAGACUCCUUCUCCGGCAAUUCGAGAUUGCCUCUGCAGCUCCUACAG--CCACGCCC------UCCCCACCCAGUAA--CCGCCCCCUU-UUGGCUCUCGUCCAGUU ...(((.........(((.....(((.((((....))))))).....)--))......------..............--..(((.....-..)))....)))..... ( -16.30) >DroSec_CAF1 27755 98 + 1 UCAGGCUUCUUCUUCGGCAAUUCGAGAUUGCCUCUCCAGCUCCUGCUG--ACACGCCC------UCCCCACCCAGUGC--CUGCCCCCUUUUUGGCUCUCAGCCAGUU .(((((.........(((((((...)))))))....((((....))))--........------............))--)))........(((((.....))))).. ( -26.60) >DroSim_CAF1 28345 98 + 1 UCAGGCUUCUUCUCCGGCAAUUCGAGAUUGCCUCUCCAGCUCCUACUG--CCACGCCC------UGCCCACCCAGUGC--CCGCCCCCUUUUUGGCUCUCGGCCAGUU ...(((.........((((....(((.(((......))))))....))--))..((.(------((......))).))--..)))......(((((.....))))).. ( -23.00) >DroEre_CAF1 28535 82 + 1 UCUGGCUUCUUCUCCGGCAAUUCGAGAUUGCCUCUCCAGCACCUACGG--CCACGCCC------AC---------------CGCC--CC-UUUGGCUCUCGGCCAGUU .((((((........(((((((...)))))))..............((--(...))).------..---------------.(((--..-...)))....)))))).. ( -21.50) >DroYak_CAF1 29108 86 + 1 UCAGCCUUCUUCUCCGGCAAUUUGAGAUUGCCUCUCCAGCACCUACUGCACCACGCCC------UC---------------CGCCUCCU-UUUGGCUCCCGGCCAGUU ...(((.........(((.....((((.....))))..(((.....))).....))).------..---------------.(((....-...)))....)))..... ( -18.50) >DroAna_CAF1 30572 100 + 1 UCAGGCUUCUUCUCGGGCAAUUCGAGAUUGCCUCC---GCUCCGAGCC--CCAGGCCCCAUCGUUCCUCGCCAUGCCAUUCUGCC--CA-CUUGGCUCUUGGCCAGUU ...(((((...(((((((.....(((.....))).---)).)))))..--..))))).........((.((((.((((.......--..-..))))...)))).)).. ( -28.50) >consensus UCAGGCUUCUUCUCCGGCAAUUCGAGAUUGCCUCUCCAGCUCCUACUG__CCACGCCC______UCCCCACCCAGU____CCGCCCCCU_UUUGGCUCUCGGCCAGUU ...((((........(((((((...)))))))..................................................(((........)))....)))).... (-13.59 = -13.95 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:14 2006