Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,314,569 – 2,314,663 |
Length | 94 |
Max. P | 0.719820 |
Location | 2,314,569 – 2,314,663 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 94.41 |
Mean single sequence MFE | -23.50 |
Consensus MFE | -20.02 |
Energy contribution | -20.35 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.25 |
Structure conservation index | 0.85 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.719820 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2314569 94 - 22407834 UGUGCCGCA--AUAGCAACAACGUUCAGUAACAACAACCAGCAACAACAACUGUGCGUUGUUCACUGCGGAAGCGGAAACUUCAAAGCGCAAACAC (((((.((.--...))((((((((.((((....................)))).))))))))..((((....))))..........)))))..... ( -26.75) >DroEre_CAF1 21541 94 - 1 UGUGCCGCA--AUAGCAACAACGUGCAGUAACAACAACCAGCCACAACAACUCUUCGUUGUUCGCUGCGGAAGCGGAAACUUCAAAGCGCAAACAC (((((((((--...(((((((((...(((....................)))...))))))).))))))((((......))))...)))))..... ( -22.65) >DroYak_CAF1 21461 96 - 1 UGUGCCGCAGAAUAGCAACAACGUUCAGUAACAACAACCAGCCACAACAACACUUCGUUGUUCACUGCGGAAGCGGAAACUUCAAAGCGCAAACAC ((((((((((............(((....))).............((((((.....))))))..)))))((((......))))...)))))..... ( -21.10) >consensus UGUGCCGCA__AUAGCAACAACGUUCAGUAACAACAACCAGCCACAACAACUCUUCGUUGUUCACUGCGGAAGCGGAAACUUCAAAGCGCAAACAC (((((.((......))(((((((...(((....................)))...)))))))..((((....))))..........)))))..... (-20.02 = -20.35 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:14 2006