Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,306,075 – 2,306,173 |
Length | 98 |
Max. P | 0.976342 |
Location | 2,306,075 – 2,306,173 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 76.69 |
Mean single sequence MFE | -18.90 |
Consensus MFE | -14.73 |
Energy contribution | -15.23 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.80 |
Structure conservation index | 0.78 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.962902 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2306075 98 + 22407834 CAUUUGACAUUAGUUGAGAUUUUCAAUGCUUUUAGCC----CGCAUUUUCCC------CCAUU-----CACCAAA--CCAUCC-CCAUAUCCACGGCGCUGAAAACGUGUCAAAUG--- ((((((((((..((((((...))))))(.((((((((----((.........------.....-----.......--......-.........))).))))))).)))))))))))--- ( -20.82) >DroSec_CAF1 12090 106 + 1 CAUUUGACAUUAGUUGAGAUUUUCAAUGCUUUUAGCC----CGCAUUUUCCCCAUUCCCCUUU-----GACCAUUCCCCAUCC-CCAUUUCCACGGCGUUGAAAACGUGUCAAAUG--- ((((((((((..((((((...))))))(.((((((((----((....................-----...............-.........))).))))))).)))))))))))--- ( -18.20) >DroSim_CAF1 12673 106 + 1 CAUUUGACAUUAGUUGAGAUUUUCAAUGCUUUUAGCC----CGCUUUUUCCCCAUUCCCCUUU-----GACCAUUCCCCAUCC-CCAUUUCCACGGCGUUGAAAACGUGUCAAAUG--- ((((((((((..((((((...))))))(.((((((((----((....................-----...............-.........))).))))))).)))))))))))--- ( -18.20) >DroEre_CAF1 12286 115 + 1 CAUUUGACAUUAGUUGAGAUUUUCAAUGCUUUUAGCCCGUCCGCAUUUUCCCCAUACCCAUUUCCCACACCCAUUUCCCAUAC-CCAUUUCCACGGCGUUGAAAACGUGUCAAAUG--- ((((((((((..((((((...))))))(.(((((((((((...........................................-........)))).))))))).)))))))))))--- ( -19.24) >DroYak_CAF1 12647 106 + 1 CAUUUGACAUUAGUUGAGAUUUUCAAUGCUUUUAGCC----CGCAUUUUCCCC------AUUUUCCAUCGCCAUUUCCCAUCCCCCAUUUCCACGGCGUUGAAAACGUGUCAAAUG--- ((((((((((..............(((((........----.)))))......------.(((((...((((......................))))..))))).))))))))))--- ( -19.95) >DroPer_CAF1 52620 79 + 1 CAUUUGACAUUAGUUGAGAUUUUCAAAGCUCUC---C----CUCCUCUUUC---------------------------------CGCCUGCAACGGCGUUGAAAACGUGUCAAAUCGUU .(((((((((..(((((((..........))))---.----......((..---------------------------------((((......))))..)).)))))))))))).... ( -17.00) >consensus CAUUUGACAUUAGUUGAGAUUUUCAAUGCUUUUAGCC____CGCAUUUUCCCC_____CCUUU_____CACCAUU_CCCAUCC_CCAUUUCCACGGCGUUGAAAACGUGUCAAAUG___ ((((((((((.......(.(((((((((((................................................................))))))))))))))))))))))... (-14.73 = -15.23 + 0.50)
Location | 2,306,075 – 2,306,173 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 76.69 |
Mean single sequence MFE | -28.21 |
Consensus MFE | -15.51 |
Energy contribution | -18.07 |
Covariance contribution | 2.56 |
Combinations/Pair | 1.13 |
Mean z-score | -2.48 |
Structure conservation index | 0.55 |
SVM decision value | 1.77 |
SVM RNA-class probability | 0.976342 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2306075 98 - 22407834 ---CAUUUGACACGUUUUCAGCGCCGUGGAUAUGG-GGAUGG--UUUGGUG-----AAUGG------GGGAAAAUGCG----GGCUAAAAGCAUUGAAAAUCUCAACUAAUGUCAAAUG ---(((((((((((((..((...(....)...)).-.)))).--.(((((.-----..(((------((...(((((.----........))))).....))))))))))))))))))) ( -28.10) >DroSec_CAF1 12090 106 - 1 ---CAUUUGACACGUUUUCAACGCCGUGGAAAUGG-GGAUGGGGAAUGGUC-----AAAGGGGAAUGGGGAAAAUGCG----GGCUAAAAGCAUUGAAAAUCUCAACUAAUGUCAAAUG ---(((((((((((((..(..(.((((....))))-.)...)..))))...-----.........(((((..(((((.----........))))).....))))).....))))))))) ( -29.50) >DroSim_CAF1 12673 106 - 1 ---CAUUUGACACGUUUUCAACGCCGUGGAAAUGG-GGAUGGGGAAUGGUC-----AAAGGGGAAUGGGGAAAAAGCG----GGCUAAAAGCAUUGAAAAUCUCAACUAAUGUCAAAUG ---(((((((((((((..(..(.((((....))))-.)...)..))))...-----...........((((.....((----(((.....)).)))....))))......))))))))) ( -27.30) >DroEre_CAF1 12286 115 - 1 ---CAUUUGACACGUUUUCAACGCCGUGGAAAUGG-GUAUGGGAAAUGGGUGUGGGAAAUGGGUAUGGGGAAAAUGCGGACGGGCUAAAAGCAUUGAAAAUCUCAACUAAUGUCAAAUG ---((((((((((((((((.((.((((....))))-))...)))))))(((.(((((.....((((.......))))...(((((.....)).)))....))))))))..))))))))) ( -30.70) >DroYak_CAF1 12647 106 - 1 ---CAUUUGACACGUUUUCAACGCCGUGGAAAUGGGGGAUGGGAAAUGGCGAUGGAAAAU------GGGGAAAAUGCG----GGCUAAAAGCAUUGAAAAUCUCAACUAAUGUCAAAUG ---((((((((((((((((..((((((..................))))))...))))))------)((((.(((((.----........))))).....))))......))))))))) ( -30.87) >DroPer_CAF1 52620 79 - 1 AACGAUUUGACACGUUUUCAACGCCGUUGCAGGCG---------------------------------GAAAGAGGAG----G---GAGAGCUUUGAAAAUCUCAACUAAUGUCAAAUG ....(((((((((.(((((..((((......))))---------------------------------....))))).----)---((((..........))))......)))))))). ( -22.80) >consensus ___CAUUUGACACGUUUUCAACGCCGUGGAAAUGG_GGAUGGG_AAUGGUC_____AAAGG_____GGGGAAAAUGCG____GGCUAAAAGCAUUGAAAAUCUCAACUAAUGUCAAAUG ...((((((((((((((((..(.((((....)))).)....)))))))...................((((.(((((.............))))).....))))......))))))))) (-15.51 = -18.07 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:12 2006