Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,305,781 – 2,305,881 |
Length | 100 |
Max. P | 0.657655 |
Location | 2,305,781 – 2,305,881 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 72.87 |
Mean single sequence MFE | -32.40 |
Consensus MFE | -12.35 |
Energy contribution | -13.41 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.15 |
Mean z-score | -1.78 |
Structure conservation index | 0.38 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.657655 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2305781 100 + 22407834 UGUCCGUCACUCAACUUUGAGUG----GAUACUUGACAGGGUUU-UAUGUGGAAGCUUGUCGCGAACAGGGCUUUGCAAACUUUGCA----------AAUCCUCUUCGCCGCUGC (((((...(((((....))))))----))))...((((((.(((-(....)))).))))))(((((.((((.((((((.....))))----------)))))).)))))...... ( -34.70) >DroSec_CAF1 11792 104 + 1 UGUCCGUCACUCGACUUUGAGUGGAUGGAUACUUGACAGGGUUU-UAUGUAGAAGCUUGUCGUGAACAGGGCUUUGCAGACUUGGCA----------AAUCCCCUUCGCCGCUGC (((((((((((((....))))).))))))))...((((((.(((-(....)))).))))))(((((..(((.(((((.......)))----------)).))).)))))...... ( -37.80) >DroSim_CAF1 12375 104 + 1 UGUCCGUCACUCGACUUUGAGUGGAUGGAUACUUGACAGGGUUU-UAUGUAGAAGCUUGUCGUGAACAGGGCUUUGCAGACUUGGCA----------AGUCCCCUUCGCCGCUGC (((((((((((((....))))).))))))))...((((((.(((-(....)))).))))))(((((..((((((.((.......)))----------)))))..)))))...... ( -38.40) >DroEre_CAF1 12007 86 + 1 UGUCCGUCACUCAACUUUGAGUG----GAUACUUGACACGGCUUUUAUGUAGAAGCUUAUCGCAG----GGA---------------------UUUGAAUCACCCUCGCUGCUGC ((((..(((((((....))))))----)......)))).(((((((....)))))))....((((----.((---------------------............)).))))... ( -21.90) >DroYak_CAF1 12351 101 + 1 UGUCCGUCACUCGACAUUGAGUG----GAUACUUGACAGGGCUU-UGUGUAGCAGCUUAUCGCGA----ACCUUAGCUAACUUUAUAUAGAUAGAUGGAU-----ACGCUGCUGC .((((.(((((((....))))))----)..........))))..-...((((((((.((((((..----......))....(((((....)))))..)))-----).)))))))) ( -29.20) >consensus UGUCCGUCACUCGACUUUGAGUG____GAUACUUGACAGGGUUU_UAUGUAGAAGCUUGUCGCGAACAGGGCUUUGCAAACUUGGCA__________AAUCCCCUUCGCCGCUGC ((((...((((((....))))))....))))...((((.(((((........)))))))))(((((..(((............................)))..)))))...... (-12.35 = -13.41 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:10 2006