Locus 809

Sequence ID 2L_DroMel_CAF1
Location 2,305,495 – 2,305,601
Length 106
Max. P 0.941889
window1321

overview

Window 1

Location 2,305,495 – 2,305,601
Length 106
Sequences 3
Columns 106
Reading direction forward
Mean pairwise identity 72.20
Mean single sequence MFE -20.20
Consensus MFE -10.90
Energy contribution -12.23
Covariance contribution 1.33
Combinations/Pair 1.00
Mean z-score -2.13
Structure conservation index 0.54
SVM decision value 1.32
SVM RNA-class probability 0.941889
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2305495 106 + 22407834
UAGCUAUUAUCUGUAUAAUAUCUAUAUUGUCUAUCUGUAUUGUAUAAAGCAUAUUGUAGAAAUUGACAAAUAUGACGAUCAGAUAAGGUCUUAUCAUAAUUGAGCC
......(((((((.((....((.((((((((..((((((.(((.....)))...))))))....))).)))))))..)))))))))((.((((.......)))))) ( -16.60)
>DroSec_CAF1 11524 83 + 1
UGGCUAUGAU---------UCCCACAUUGCCU--------------AAGCCGAUUGUAGAAAUUGGCUAAUAUGAAGAUAAGAUAAGGUCUUAUCAUAAUUGAGAA
.(((.(((..---------.....))).))).--------------.((((((((.....))))))))........((((((((...))))))))........... ( -22.30)
>DroSim_CAF1 12107 83 + 1
UGGCUAUGAU---------UCCCACAUUGCUU--------------AAGCCGAUUGUAGAAAUUGGCUUAUAUAAAGAUAAGAUAAGGUCUUAUCAUAAUUGAGAA
.(((.(((..---------.....))).)))(--------------(((((((((.....))))))))))......((((((((...))))))))........... ( -21.70)
>consensus
UGGCUAUGAU_________UCCCACAUUGCCU______________AAGCCGAUUGUAGAAAUUGGCUAAUAUGAAGAUAAGAUAAGGUCUUAUCAUAAUUGAGAA
................................................(((((((.....))))))).........((((((((...))))))))........... (-10.90 = -12.23 +   1.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:09 2006