Locus 808

Sequence ID 2L_DroMel_CAF1
Location 2,300,964 – 2,301,054
Length 90
Max. P 0.658674
window1320

overview

Window 0

Location 2,300,964 – 2,301,054
Length 90
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 77.22
Mean single sequence MFE -18.90
Consensus MFE -7.47
Energy contribution -7.47
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.31
Structure conservation index 0.40
SVM decision value 0.26
SVM RNA-class probability 0.658674
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2300964 90 - 22407834
---CACAUUUUAUUCGAAUGUUUUCCUC-CG--GUUGUGCCCUCUUAUUUUUAUCAUCCUUCGGGAAGCAAUU-UAAA---AUAUUGCACACUCCCCUCG
---.((((((.....)))))).......-.(--(..(((.................(((....))).(((((.-....---..))))).)))..)).... ( -16.70)
>DroPse_CAF1 36749 90 - 1
---CACAUUUUAUUCGAAUGCUUUCUCU-C-----UCUCCCUUUUUGUUGGGAGCAUCCUUUGGGAUGCAAUU-UUAAAAUAUAUUGCACAGACGACUGC
---..........(((..(((.......-.-----..((((........))))((((((....))))))....-............)))....))).... ( -19.60)
>DroSim_CAF1 7507 93 - 1
CGGCACAUUUUAUUCGAAUGUUUUCAUC-CG--GUUGUGCCCUCUUAUUUUUAUCAUCCUUCGGGAAGCAAUU-UAAA---AUAUUGCACACUCCUCUCG
.((((((......(((.(((....))).-))--).))))))...............(((....))).(((((.-....---..)))))............ ( -21.20)
>DroEre_CAF1 7273 93 - 1
CGGCACAUUUUAUUCGAAUAUUUUCAGU-CG--GUUGUGCCCUCUUACUUUUAUCAUCCUGCGGGAAGCAAUU-UAAA---AUAUUGCACUCUCCUCUUG
.((((((.(..(((.(((....))))))-..--).))))))...............(((....))).(((((.-....---..)))))............ ( -17.70)
>DroYak_CAF1 7504 94 - 1
CGGCACAUUUUAUUCGAAUGUUUUCAGUUCG--GUUGUGGCCUCUUAUUUUUAUCAUCCUUCGGGAAGCAAUU-UAAA---AUAUUGCACACUCCUCUUG
.(((.(((.....((((((.......)))))--)..))))))..............(((....))).(((((.-....---..)))))............ ( -20.80)
>DroMoj_CAF1 8107 97 - 1
UAGCACAUUUUAUCGCAAUGCUUUUUCUUCGCAUUUCUGUUUUCUAUUUUUUUGUAUCCUUUGGGAUGCAAUUUUAAA---AUAUUGCAUACACUUCUCG
..(((.........(.(((((.........))))).).......((((((.((((((((....))))))))....)))---))).)))............ ( -17.40)
>consensus
CGGCACAUUUUAUUCGAAUGUUUUCACU_CG__GUUGUGCCCUCUUAUUUUUAUCAUCCUUCGGGAAGCAAUU_UAAA___AUAUUGCACACUCCUCUCG
........................................................(((....))).(((((...........)))))............ ( -7.47 =  -7.47 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:08 2006