Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,293,669 – 2,293,771 |
Length | 102 |
Max. P | 0.822958 |
Location | 2,293,669 – 2,293,771 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 78.78 |
Mean single sequence MFE | -22.08 |
Consensus MFE | -7.82 |
Energy contribution | -7.82 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.98 |
Structure conservation index | 0.35 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.822958 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2293669 102 - 22407834 UUUUUAGUUGAUUGAAAAAGGUGAUGUCAAGGUUUUUCUUU---UUCCUUUUUCCU----UCUUUGUUGACCUUUU---UC-------AGUUAAAUAUGAUAGAAGUUUUUCACGCUGA ((((((.(((((((((((((((.(...(((((.........---............----.))))).).)))))))---))-------))))))......))))))............. ( -20.05) >DroPse_CAF1 32555 90 - 1 UUUUUAGUUGAUUGAAAAAGGUAAUGUCAAGGCUUUCUU------------UUUAU----GCUUUGUUGACCUUUUUUUUC-------AGCUAAAUAUUAUAGAAGUUUG-CAU----- ..(((((((((..(((((((((.....((((((......------------.....----))))))...))))))))).))-------)))))))...............-...----- ( -25.20) >DroEre_CAF1 3288 102 - 1 UUUUUAGUUGAUUGAAAAAGGUGAUGUCAAGGUUUUCCUCU---UUCCCAUUUUCU----UCUUUGCUGACCUUUU---UC-------AGUUAAAUAUGAUAGAAGUUUUUCACUUUGA ...(((.(((((((((((((((.(.(.(((((.........---............----.))))))).)))))))---))-------))))))...)))..(((((.....))))).. ( -21.25) >DroYak_CAF1 3428 102 - 1 UUUUUAGUUGAUUGAAAAAGGUGAUGUCAAGGUUUUCCUUU---UUCCUAUUUUAU----UCUUUGUUGACCUUUU---UC-------AGUUAAAUAUGAUAGAAGUUUUUCACUUUGA ...(((.(((((((((((((((.(...(((((.........---............----.))))).).)))))))---))-------))))))...)))..(((((.....))))).. ( -21.35) >DroAna_CAF1 3565 119 - 1 UUUUUAGUUGAUUGAAAAAGGUGAUGUCAAGGUUUUUCACUUUUCUUCUAUUUUAUUCCCUCUUUGUUGACCUUUUUUUUCAGCUUUUCGUUAAAUAUGAUAGAAGUUUUGCACUUUGA .....((((((..(((((((((.(...(((((.............................))))).).))))))))).))))))..((((.....))))..(((((.....))))).. ( -19.45) >DroPer_CAF1 41562 90 - 1 UUUUUAGUUGAUUGAAAAAGGUGAUGUCAAGGCUUUCUU------------UUUAC----GCUUUGUUGACCUUUUUUUUC-------AGCUAAAUAUUAUAGAAGUUUG-CAU----- ..(((((((((..(((((((((.(...((((((......------------.....----)))))).).))))))))).))-------)))))))...............-...----- ( -25.20) >consensus UUUUUAGUUGAUUGAAAAAGGUGAUGUCAAGGUUUUCCU_U___UUCCUAUUUUAU____UCUUUGUUGACCUUUU___UC_______AGUUAAAUAUGAUAGAAGUUUUUCACUUUGA ...............(((((((.(...(((((.............................))))).).)))))))........................................... ( -7.82 = -7.82 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:07 2006