Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,288,341 – 2,288,450 |
Length | 109 |
Max. P | 0.975552 |
Location | 2,288,341 – 2,288,450 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 75.33 |
Mean single sequence MFE | -19.10 |
Consensus MFE | -12.13 |
Energy contribution | -11.47 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.15 |
Mean z-score | -2.04 |
Structure conservation index | 0.63 |
SVM decision value | 1.75 |
SVM RNA-class probability | 0.975552 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2288341 109 + 22407834 CAGCAGAAUAGGAAAGAAAUCUACCUAAUCUGAUGAUUACCCCUUAUCAUAUAUAUAUGUAUAUAUGUAUGUACCUUGCUGCUUAUUUUUUCAGACCGCCUGAAAAUAU .(((((...(((.............(((((....)))))........((((((((((....))))))))))..)))..)))))....(((((((.....)))))))... ( -25.60) >DroSec_CAF1 24451 82 + 1 CAGUAGAAUAAGAAAGAAAUCUCCCUAAUCGAAUGAUUAGCUCUUAUCA---------------------------UGCUGCUUAUUUUUUCAGACUGCCUGAAAGUAU (((((..((((((.((....))..((((((....)))))).))))))..---------------------------)))))......(((((((.....)))))))... ( -18.30) >DroSim_CAF1 26444 82 + 1 CAGUAGAAUAAGAAAGAAAUCUCCCUAAUCGAAUGAUUACCUCUGAUCA---------------------------UGCUGCUUAUUUUUUCAGACUGCCUGAAAGUAU .(((((....((..((....))..))......(((((((....))))))---------------------------).)))))....(((((((.....)))))))... ( -13.40) >consensus CAGUAGAAUAAGAAAGAAAUCUCCCUAAUCGAAUGAUUACCUCUUAUCA___________________________UGCUGCUUAUUUUUUCAGACUGCCUGAAAGUAU .(((((....(((......)))...(((((....))))).......................................)))))....(((((((.....)))))))... (-12.13 = -11.47 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:06 2006