Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,288,211 – 2,288,309 |
Length | 98 |
Max. P | 0.836797 |
Location | 2,288,211 – 2,288,309 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 92.54 |
Mean single sequence MFE | -18.41 |
Consensus MFE | -15.54 |
Energy contribution | -15.58 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.05 |
Mean z-score | -1.52 |
Structure conservation index | 0.84 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.836797 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2288211 98 - 22407834 CAUCUGUGAAUCAAUCGAAACUGCCCUCAGUGCCAUUAUUUAUACAGAGUGCCCCACAUAUGGCAUCAUUAAUUGUUCACCACACCC---AGUACUCUGCA ....(((((((.(((.(..((((....))))..)))))))))))((((((((........(((...((.....))....))).....---.)))))))).. ( -16.84) >DroSec_CAF1 24321 98 - 1 CAUCCGUGAAUCAAUCGAAACUGCCCUCAGUGCCAUUAUUUAUACAGAGUGCCCCACAUGUGGCAUCAUCAAUUGUUCACCACAACC---AGUACUCCGCA .....(((........(..((((....))))..)............((((((......(((((...((.....))....)))))...---.))))))))). ( -17.50) >DroSim_CAF1 26314 98 - 1 CAUCCGUGAAUCAAUCGAAACUGCCCUCAGUGCCAUUAUUUAUACAGAGUGCCCCACAUGUGGCAUCAUCAAUUGUUCACCACAACC---AGUACUCCGCA .....(((........(..((((....))))..)............((((((......(((((...((.....))....)))))...---.))))))))). ( -17.50) >DroEre_CAF1 24414 98 - 1 CAUCCGUGAAUCAAUCGAAACUGCCCGCAGUGCUAUUAUUUAUCCUGAGUGCCCCACAUAUGGCCUCAUCAAUUGUUCACCACACCC---AGCACUCCGCA .....(((((.((((.((.((((....))))..............((((.(((........))))))))).))))))))).......---.((.....)). ( -21.60) >DroYak_CAF1 24815 101 - 1 CAUCCGUGAAUCAAUCGAAACUGCCCGCAGUGCUAUUAUUUAUCCAGAGUGCCCCACAUAUGGCAUCAUCAAUUGUUCACCACACUCCGCAGUACUCCGCU .....(((((.((((.((.((((....))))...............((.((((........)))))).)).)))))))))........((........)). ( -18.60) >consensus CAUCCGUGAAUCAAUCGAAACUGCCCUCAGUGCCAUUAUUUAUACAGAGUGCCCCACAUAUGGCAUCAUCAAUUGUUCACCACACCC___AGUACUCCGCA .....(((((.((((.((.((((....))))...............((.((((........)))))).)).)))))))))..................... (-15.54 = -15.58 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:05 2006