Locus 804

Sequence ID 2L_DroMel_CAF1
Location 2,285,364 – 2,285,475
Length 111
Max. P 0.645324
window1316

overview

Window 6

Location 2,285,364 – 2,285,475
Length 111
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 75.67
Mean single sequence MFE -32.75
Consensus MFE -15.76
Energy contribution -16.18
Covariance contribution 0.42
Combinations/Pair 1.36
Mean z-score -1.87
Structure conservation index 0.48
SVM decision value 0.23
SVM RNA-class probability 0.645324
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2285364 111 + 22407834
GCCGGUGAAGAGAAUCACAGUCCGUGUGGGAACGCCGGAU---AUCUAUAGAGGUGGUAGAAUUAUCAGGGUAACAGCGCUGGUGGUUCAUGAAAAUU--AUAAGAAUUGGG----ACAA
.(((((.......(((((.(((((.(((....))))))))---.((....)).))))).((((((((((.((....)).)))))))))).........--......))))).----.... ( -33.90)
>DroSec_CAF1 21583 111 + 1
GCCGGUGAAGAGAAUCACGGUUCGUGUGGGAACGCCGGAU---AUCAAGAGAGGUGGCAGAAUUGUCAGGGUAACGGCGCUGGUGGUUCAUGAAAAUU--AUAAGGAGUGGG----ACAA
((((((((......)))).(((((.(((....))))))))---...........)))).((((..((((.((....)).))))..)))).........--............----.... ( -31.90)
>DroSim_CAF1 21875 111 + 1
GCCGGUGAAGAGGAUCACAGUCCGUGUGGGAACGCCGGAU---AUCAAGAGAGGUGGCAGAAUUGUCAGGGUAACUGCGCUGGUGGUUCAUGAAAAUU--AUAAGGAGUGGG----ACAA
((((((((......)))).(((((.(((....))))))))---...........)))).((((..((((.((....)).))))..)))).........--............----.... ( -34.60)
>DroEre_CAF1 21592 111 + 1
GCCGGUGAAGAAGAUCACUGUCCGUGUGGGAACGCCGGAU---AUCUAUAGAGGUGGUAAAGUUAUCAAGGUGACUGCGAUGGUGGUUCAUGACAAGU--AUGAGGAGUGGA----ACAA
((((((((.....(((((((((((.(((....))))))))---.((....))))))))....))))).((....)).....))).((((((..(....--....)..)).))----)).. ( -30.20)
>DroYak_CAF1 21915 111 + 1
GCCGGUGAAGAAGAUCACUGUCCGUGUGGGAACGCCGGAU---AUCUAUAGAGGUGGUAAUGUUAUCAAGGUGACUGCGAUGGCGGUGCAUGAAAACU--ACAAGGAGUGGA----ACAA
((((((((......)))))(((((.(((....))))))))---.........))).(((.(((((((.((....))..))))))).))).......((--((.....)))).----.... ( -34.80)
>DroAna_CAF1 21207 119 + 1
-GCGGCGGACAACGUCUCCAUUCAGGUGGGAACCGACGAUCGGACCAAAGGAAAGGGCCGAGUCGUCCCAGUGACUUCGAUUAUAGUCCACGAUAAGUUUUUAAAAAAUAGUGCUCCCAA
-..((((.....))))..........(((((...(((((((((.((........)).)))).)))))...((((((........))).))).......................))))). ( -31.10)
>consensus
GCCGGUGAAGAAGAUCACAGUCCGUGUGGGAACGCCGGAU___AUCAAUAGAGGUGGCAGAAUUAUCAGGGUAACUGCGAUGGUGGUUCAUGAAAAUU__AUAAGGAGUGGG____ACAA
(((.((((......)))).(((((.(((....))))))))..............((((......)))).)))((((((....))))))................................ (-15.76 = -16.18 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:04 2006