Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,284,469 – 2,284,566 |
Length | 97 |
Max. P | 0.570800 |
Location | 2,284,469 – 2,284,566 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 79.54 |
Mean single sequence MFE | -19.74 |
Consensus MFE | -14.62 |
Energy contribution | -14.06 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.15 |
Mean z-score | -1.42 |
Structure conservation index | 0.74 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.570800 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2284469 97 + 22407834 -----------------AUCAUCCUCAGCAUUAUCUUUCUACCCCAAUGAAAGGCAUUGCAACGGGUCAAAGGACACUUUUGUGCCAUUCAUUUGCAUCCUGCUUCCAGCCCAU -----------------..........(((.(..(((((.........)))))..).)))...((((....((.(((....)))))........((.....)).....)))).. ( -21.40) >DroSec_CAF1 20686 97 + 1 -----------------AUCAUCAUCAUCAUUAUCUUUCUGCCUCAAUGAAAGGCAUUGCAACGGGUCAAAGGACACCUUUGUGCCAUCCAUUUGCAUCCUGCUUCCAGCCCAU -----------------.................(((((.........)))))(((.(((((..(((((((((...)))))).)))......)))))...)))........... ( -18.30) >DroSim_CAF1 20960 114 + 1 UAAAUCCGUAUGCCAUCAUCAUCAUCAUCAUUAUCUUUCUGCCUCAAUGAAAGGCAUUGCAACGGGUCAAAGGACACCUUUGUGCCAUCCAUUUGCAUCCUGCUUCCAGUCCAU ..................................(((((.........)))))(((.(((((..(((((((((...)))))).)))......)))))...)))........... ( -18.30) >DroEre_CAF1 20764 86 + 1 -------------C---A------------AACUCAUUCCGCCCUAAUGAAAGGCAUUGCAACGGGUCAAAGGACACCUUUGUGCCAUCCAUUUGCAUCCUGCUUCCAGCCCAU -------------.---.------------...(((((.......))))).(((((.(((((..(((((((((...)))))).)))......)))))...)))))......... ( -17.40) >DroYak_CAF1 21064 91 + 1 -------------C---AUCAUC-------AUCAAAUUCUGCCCUAAUGAAAGGCAUUGCAACGGGUCAAAGGACACCUUUGUGGCGUCCAUUUGCAUCCUGUUUCCAGUCCAU -------------.---......-------......................((.((((.((((((.((((((((.((.....)).)))).))))...))))))..)))))).. ( -23.30) >consensus _____________C___AUCAUC_UCA_CAUUAUCUUUCUGCCCCAAUGAAAGGCAUUGCAACGGGUCAAAGGACACCUUUGUGCCAUCCAUUUGCAUCCUGCUUCCAGCCCAU ....................................................(((...(((..((((((((((((((....)))...))).)))).))))))).....)))... (-14.62 = -14.06 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:03 2006