Locus 800

Sequence ID 2L_DroMel_CAF1
Location 2,281,746 – 2,281,842
Length 96
Max. P 0.574910
window1311

overview

Window 1

Location 2,281,746 – 2,281,842
Length 96
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 85.42
Mean single sequence MFE -33.02
Consensus MFE -22.12
Energy contribution -22.52
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.82
Structure conservation index 0.67
SVM decision value 0.08
SVM RNA-class probability 0.574910
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2281746 96 - 22407834
UGCUU-----------------UUCAUUUCAAGUGGCCAACGGCCUUCGAAAGAGCUUAGACCAAGGCCAAAUCAAAUAUUUGACAGCCCGCCGGGGGCCAAAGUGCAA-AUAG
.....-----------------...((((((..(((((..((((.(((....)))..........(((....((((....))))..))).))))..)))))...)).))-)).. ( -28.70)
>DroSec_CAF1 17916 112 - 1
CGCUUUCGUGUC-GGGCGCCACUUCAUUUCAAGUGGCCAACGGCCUUCAAAAGAGCUUAGACCAAGGCCAAAUCAAAUAUUUGACAGCCCGCCGGGGGCCAAAGUGCAA-AUGG
.(((..((.(.(-(((((((((((......)))))))....((((((................)))))).................))))))))..)))..........-.... ( -39.19)
>DroSim_CAF1 18022 112 - 1
CGCUUUCGUGUC-GGGCGCCACUUCAUUUCAAGUGGCCAACGGCCUUCAAAAGAGCUUAGACCAAGGCCAAAUCAAAUAUUUGACAGCCCGCAGGGGGCCAAAGUGCAA-AUAG
.(((..(.((.(-(((((((((((......)))))))....((((((................)))))).................))))))))..)))..........-.... ( -37.69)
>DroEre_CAF1 18027 97 - 1
----------------CACCACUUCAUUUCAAGUGGCCAACGGCCUUCAAAAUAGCUUAAACCAAGGCCAAAUCAAAUACUUGACAGCCCGCCGGGGGCCAAAGUGCAA-AUAG
----------------.........((((((..(((((..((((..........((((......))))....((((....))))......))))..)))))...)).))-)).. ( -24.70)
>DroYak_CAF1 18255 114 - 1
GGCUUUCGUGUCCGGGCACCACUUCUCUUCAAGUGGCCAACGGCCUUCAGAAGAGCUUAGACCAAGGCCAAAUCAAAUAUUUGACAGCCAGCCGGGGGCCAAAGUGCAAAAUGG
((((..((.(((..(((........(((((....((((...))))....))))))))..)))...(((....((((....))))..)))...))..)))).............. ( -34.80)
>consensus
CGCUUUCGUGUC_GGGCACCACUUCAUUUCAAGUGGCCAACGGCCUUCAAAAGAGCUUAGACCAAGGCCAAAUCAAAUAUUUGACAGCCCGCCGGGGGCCAAAGUGCAA_AUAG
.............................((..(((((..((((.(((....)))..........(((....((((....))))..))).))))..)))))...))........ (-22.12 = -22.52 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:59 2006