Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 278,338 – 278,430 |
Length | 92 |
Max. P | 0.664106 |
Location | 278,338 – 278,430 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 87.28 |
Mean single sequence MFE | -23.52 |
Consensus MFE | -16.54 |
Energy contribution | -17.84 |
Covariance contribution | 1.30 |
Combinations/Pair | 1.21 |
Mean z-score | -1.93 |
Structure conservation index | 0.70 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.664106 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 278338 92 + 22407834 AACAUCUAAUGUACCUAAUGAUUUCAAAAGGUGGGGCCGAGUCUGUAUGAAAAUACAGAUUGUCGCAUUAUUUUCUGAUAAGGAGGUGCAUU .......(((((((((....(((..((((((((.(((..(((((((((....)))))))))))).)))).))))..)))....))))))))) ( -30.30) >DroSec_CAF1 403 92 + 1 AGCAUAUAAUGUACCUAAUGAUUUCAAGGGGUGGGGCCGAGUCUGUAUUGAAAUACAUAUUGUCACAUUAUUAUCUGAUAAGGAAGUGUAUU .(((((((((((((((..((....))..))))..(((..(((.(((((....))))).)))))))))))))..(((.....))).))))... ( -16.10) >DroSim_CAF1 403 88 + 1 AGCAUAUAAUGU----AAUGAUUUCAAGGGGUGGGGCCGAGUCUGUAUUGAAAUACAUAUUGUCACAUUAUUAUCUGAUAAGGAAGUGUAUU .((((.......----.((((((((((...(..((......))..).))))))).))).((((((.((....)).))))))....))))... ( -13.60) >DroEre_CAF1 409 92 + 1 AGCAUCUAAUGUACCUAAUGAUUUCAAGGGGUGGAGUCGAGUCUGUAUAGAAAUACAGAUUGCCGCAUUAUUUUCUGAUAAGGAGGUGCAUU .......(((((((((..(....(((..((((((.((.((((((((((....))))))))).).)).))))))..)))..)..))))))))) ( -27.40) >DroYak_CAF1 409 92 + 1 AGCAUCUAAUGCACCUAAUGAAUUCGAGGGGUGGCGUCGCGUCUGUAUAGAAAUACAGAUUGUCGCAUUAAUUUCUGAUAAGGAGAUGCAUU .((((((....(((((..((....))..)))))(((.((.((((((((....)))))))))).))).................))))))... ( -30.20) >consensus AGCAUCUAAUGUACCUAAUGAUUUCAAGGGGUGGGGCCGAGUCUGUAUAGAAAUACAGAUUGUCGCAUUAUUUUCUGAUAAGGAGGUGCAUU .(((((((((((((((..((....))..)))).......(((((((((....)))))))))...))))))...(((.....))))))))... (-16.54 = -17.84 + 1.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:14 2006