Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,281,488 – 2,281,600 |
Length | 112 |
Max. P | 0.577606 |
Location | 2,281,488 – 2,281,600 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 91.15 |
Mean single sequence MFE | -28.48 |
Consensus MFE | -23.26 |
Energy contribution | -23.38 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.13 |
Mean z-score | -1.36 |
Structure conservation index | 0.82 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.577606 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2281488 112 - 22407834 UUCCUUUAUGAAUUCCUGUUCUGUAGAAAAUUUCUGCUAAUGGCAGAACCUGGAUUUCUGGCUCAAUUACAAAAAAUUAUGUUUGUGGAAUGGCUGGACUGGCGAGCUAAGA .........(((.(((.(((((((.....(((......))).)))))))..))).)))((((((..(((((((........)))))))....(((.....)))))))))... ( -28.10) >DroSec_CAF1 17659 112 - 1 UUCCUUUAUGAAUUCCGUUGCUGUAGAAAAUUUCUGCUAAUGGCAGAACCUGGAAUUCUGGCUCAAUUACAAAAAAUUAUGUUUGUGGAAUGGCUGGACUGGCGAGCUAAGA .........((((((((((((((((((.....)))))....)))))....))))))))((((((..(((((((........)))))))....(((.....)))))))))... ( -29.80) >DroSim_CAF1 17765 112 - 1 UUCCUUUAUGAAUUCCGUUGCUGUAGAAAAUUUCUGCUAAUGGCAGAACCUGGAUUUCUGGCUCAAUUACAAAAAAUUAUGUUUGUGGAAUGGCUGGACUGGCGAGCUAAGA .........(((.((((((((((((((.....)))))....)))))....)))).)))((((((..(((((((........)))))))....(((.....)))))))))... ( -26.60) >DroEre_CAF1 17764 111 - 1 UUCCUUUAUGAAUUCCUGUUUCUCAGAAAAUUUCUGCUAAUGGCAGAACCUGAAUUUCUGGCUCAAUUACAAA-AAUUAUUUUUGUGGAAUGGCCGGACUGGCGAGCUGAGA ............(((..((((.((((.....((((((.....))))))........(((((((...(((((((-(.....))))))))...))))))))))).)))).))). ( -29.70) >DroYak_CAF1 18024 107 - 1 UUCCCUUAUGAAUUCCUGUUUUGUUGGAAUUUUCUGCUAAUGGCAGAAACUGGAUUUCUGGCUCAAUUACAAA-AAUUAUGUUUGUGGAAUGGCCGGACUGGCGAGCU---- ...................(((((..(...(((((((.....))))))).......(((((((...(((((((-.......)))))))...))))))))..)))))..---- ( -28.20) >consensus UUCCUUUAUGAAUUCCUGUUCUGUAGAAAAUUUCUGCUAAUGGCAGAACCUGGAUUUCUGGCUCAAUUACAAAAAAUUAUGUUUGUGGAAUGGCUGGACUGGCGAGCUAAGA .........(((.(((..(((....)))...((((((.....))))))...))).)))((((((..(((((((........)))))))....(((.....)))))))))... (-23.26 = -23.38 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:58 2006