Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,280,784 – 2,280,946 |
Length | 162 |
Max. P | 0.804859 |
Location | 2,280,784 – 2,280,890 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 86.73 |
Mean single sequence MFE | -40.50 |
Consensus MFE | -30.91 |
Energy contribution | -31.35 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.14 |
Mean z-score | -1.62 |
Structure conservation index | 0.76 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.669320 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2280784 106 - 22407834 AGCGGUGCCAGUGGUGCCAGUAGUACCGUUGGUGUCAGUGGGUCAGGCCC-UGGG---UGAGUGGGUGUUGCUAUAAUGGCAAAUCACUUUGCACCGCAAACAGAGUCCA .(((((((.((((((((((((((((((((((....)))))).....((((-....---.....))))..))))))..)))))..)))))..)))))))............ ( -39.60) >DroSec_CAF1 16974 106 - 1 GGCGGUGCCAGUGGUGCCGGUAGUACCGGUGGUGUCAGUGGGUCAGGCCC-UGGG---UGAGUGGGUGUUGCUAUAAUGGCAAAUCACUUUGCACCGCAAACAGAGUCCA .(((((((.(((((((((((.....)))))..(((((...(((.(.((((-....---.....)))).).)))....))))).))))))..)))))))............ ( -43.70) >DroSim_CAF1 17080 106 - 1 GGCGGUGCCAGUGGUGCCGGUAGUACCGGUGGUGUCAGUGGGUCAGGCCC-UGGG---UGAGUGGGUGUUGCUAUAAUGGCAAAUCACUUUGCACCGCAAACAGAGUCCA .(((((((.(((((((((((.....)))))..(((((...(((.(.((((-....---.....)))).).)))....))))).))))))..)))))))............ ( -43.70) >DroYak_CAF1 17383 95 - 1 GGCGGUGUUG---------------GCGGUGGUGUCAGUGGGUCAGGCCCCUGGGUACUGGAUGGGUGGUGCUAUAAUGGCAAAUCACUUUGCACCGCAAACAGAGUCCA (((..((((.---------------(((((((..(((.(.(..((((((....))).)))..).).)))..))......(((((....)))))))))).))))..))).. ( -35.00) >consensus GGCGGUGCCAGUGGUGCCGGUAGUACCGGUGGUGUCAGUGGGUCAGGCCC_UGGG___UGAGUGGGUGUUGCUAUAAUGGCAAAUCACUUUGCACCGCAAACAGAGUCCA .(((((((((.((((((.....)))))).)).(((((...(((.(.((((.(.........).)))).).)))....))))).........)))))))............ (-30.91 = -31.35 + 0.44)
Location | 2,280,850 – 2,280,946 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 82.12 |
Mean single sequence MFE | -32.57 |
Consensus MFE | -23.02 |
Energy contribution | -25.40 |
Covariance contribution | 2.38 |
Combinations/Pair | 1.07 |
Mean z-score | -1.88 |
Structure conservation index | 0.71 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.804859 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2280850 96 - 22407834 CAAAGUGCCAAAGACAGUGGUCCCGAGGGGCGGGAAAGUGGUAUGUCGAUGGUGUUAGCGGUGCCAGUGGUGCCAGUAGUACCGUUGGUGUCAGUG ...((..(((..((((....(((((.....)))))........))))..)))..))...((..((((((((((.....))))))))))..)).... ( -36.40) >DroSec_CAF1 17040 96 - 1 CAAAGUGCCAAAGACAGUGGUCCCGAGGGGCGGGAAAGUGGUAUGUCGAUGGUGUUGGCGGUGCCAGUGGUGCCGGUAGUACCGGUGGUGUCAGUG ...((..(((..((((....(((((.....)))))........))))..)))..))...((..(((.((((((.....)))))).)))..)).... ( -37.50) >DroSim_CAF1 17146 96 - 1 CAAAGUGCCAAAGACAGUGGUCCCGAGGGGCGGGAAAGUGGUAUGUCGAUGGUGUUGGCGGUGCCAGUGGUGCCGGUAGUACCGGUGGUGUCAGUG ...((..(((..((((....(((((.....)))))........))))..)))..))...((..(((.((((((.....)))))).)))..)).... ( -37.50) >DroEre_CAF1 17169 72 - 1 CAAAGUGCCAAAGACAGUGGUCCCGGGGGGAAGUAAAGUGGUAUGUCGAUGGUGGUU------------------------CCGGUGGUGCCGGUG ..((.(((((..((((....((((...))))............))))..))))).))------------------------((((.....)))).. ( -18.89) >consensus CAAAGUGCCAAAGACAGUGGUCCCGAGGGGCGGGAAAGUGGUAUGUCGAUGGUGUUGGCGGUGCCAGUGGUGCCGGUAGUACCGGUGGUGUCAGUG ....(..(((..((((....(((((.....)))))........))))..((((((((.(((((((...))))))).)))))))).)))..)..... (-23.02 = -25.40 + 2.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:57 2006