Locus 796

Sequence ID 2L_DroMel_CAF1
Location 2,277,767 – 2,277,871
Length 104
Max. P 0.928121
window1303

overview

Window 3

Location 2,277,767 – 2,277,871
Length 104
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 98.48
Mean single sequence MFE -32.68
Consensus MFE -29.22
Energy contribution -29.22
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.77
Structure conservation index 0.89
SVM decision value 1.19
SVM RNA-class probability 0.928121
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2277767 104 + 22407834
CUUCUCGAUACACG---UCUGUCAAUCUGCUCUCCAAGUCGAGUGUUUGGCUGUCUGUCAUUCAAUGAUUGACGUGUGCGGGGCGUGUCAAUAAACCGACAAGUCAA
....(((.((((((---((.((((....((((........))))(..((((.....))))..)..)))).)))))))))))(((.((((........)))).))).. ( -32.90)
>DroSec_CAF1 14097 104 + 1
CUUCUCGAUACACG---UCUGUCAAUCUGCUCUCCAAGUCGAGUGUUUGGCUGUCUGUCAUUCAAUGAUUGACGUGUGCGGGGCGUGUCAAUAAACCGACAAGUCAA
....(((.((((((---((.((((....((((........))))(..((((.....))))..)..)))).)))))))))))(((.((((........)))).))).. ( -32.90)
>DroSim_CAF1 14052 104 + 1
CUUCUCGAUACACG---UCUGUCAAUCUGCUCUCCAAGUUGAGUGUUUGGCUGUCUGUCAUUCAAUGAUUGACGUGUGCGGGGCGUGUCAAUAAACCGACAAGUCAA
....(((.((((((---((.((((....((((........))))(..((((.....))))..)..)))).)))))))))))(((.((((........)))).))).. ( -33.50)
>DroEre_CAF1 14129 104 + 1
CUUCUCGAUACACG---UCUGUCAAUCUGCUCUCCAAGUCGAGUGUUUGGCUGUCUGUCAUUCAAUGAUUGACGUGUGCGGGGCGUGUCAAUAAACCGACAAGUCAA
....(((.((((((---((.((((....((((........))))(..((((.....))))..)..)))).)))))))))))(((.((((........)))).))).. ( -32.90)
>DroYak_CAF1 14435 107 + 1
CUUCUCGAUACACGUCGUCUGUCAAUCUGCUCUCCAAGUCGAGUGUUUGGCUGUCUGUCAUUCAAUGAUUGACGUGUGCGGGGCGUGUCAAUAAACCGACAAGUCAA
....(((.(((((((((...((((....((((........))))(..((((.....))))..)..))))))))))))))))(((.((((........)))).))).. ( -31.20)
>consensus
CUUCUCGAUACACG___UCUGUCAAUCUGCUCUCCAAGUCGAGUGUUUGGCUGUCUGUCAUUCAAUGAUUGACGUGUGCGGGGCGUGUCAAUAAACCGACAAGUCAA
....(((.(((((.......(((((...((((........))))..))))).(((.(((((...))))).)))))))))))(((.((((........)))).))).. (-29.22 = -29.22 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:51 2006