Locus 795

Sequence ID 2L_DroMel_CAF1
Location 2,277,349 – 2,277,463
Length 114
Max. P 0.846688
window1302

overview

Window 2

Location 2,277,349 – 2,277,463
Length 114
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 89.30
Mean single sequence MFE -24.16
Consensus MFE -19.40
Energy contribution -20.40
Covariance contribution 1.00
Combinations/Pair 1.14
Mean z-score -1.76
Structure conservation index 0.80
SVM decision value 0.77
SVM RNA-class probability 0.846688
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2277349 114 + 22407834
UGGUCUUAUGUACCAGAAGUCAUUAGCCUGUGGAUGACAAAUAAUUAUUCUAUUUUCCACACCUUGUCAUCUGUCAUUGUCUGGCAUAUGAAUUACUGAUGCCUUUAAUUAUAG
(((((....).))))((((.((((((..((((((....(((((.......))))))))))).....((((.(((((.....))))).))))....)))))).))))........ ( -24.90)
>DroSec_CAF1 13676 114 + 1
UGGUCUUAUGUACCAAAAGUCAUUAGCCUGUGGAUGUCAAAUAAUUAUUCUAUUUUCCACCCCCUGUCAUCUGUCAUUGUCUGGCAUUUAAAUUACUGAUGACUUUAAUUAUAG
(((((....).))))(((((((((((....(((((((((.(((((.((........................)).))))).))))))))).....)))))))))))........ ( -24.86)
>DroSim_CAF1 13631 113 + 1
UGGUCUUAUGUACCAAAAGUCAUUAGCCUGUGGAUGUCAAAUAAUAAUUAUAUUUU-CACCCCCUGUCAUCUGUCAUUGUCUGGCAUUUAAAUUACUGAUGACUUUAAUUAUAG
(((((....).))))(((((((((((....(((((((((.(((((.((........-((.....))......)).))))).))))))))).....)))))))))))........ ( -25.04)
>DroEre_CAF1 13713 114 + 1
UGGUUUUGUAUACCAAAAGUCAAUUGCCUGAGGAUGACAAAUAAUUAUUGUAUUUUCCACCGCUUGUCAUCUGUCAUUGUCUGGCAUUUAAAUUACUGAUGACUUUAAUUAUAG
((((.......))))(((((((..((((.((.(((((((.((.((....((..........))..)).)).))))))).)).)))).(((......))))))))))........ ( -23.40)
>DroYak_CAF1 14008 114 + 1
UGAUUUUAUAUACCAAAAGUUAUUGGCGUGUAGAUGACAAACAAUUAGUCUAUAUCCUGCCCCUUGUCAUCUGUCAUUGUCUGGCAUUUAAAUUACUGAUGACUUUAAUUAUAG
........((((...((((((((..(.....(((((((((.....(((........)))....)))))))))((((.....))))..........)..))))))))...)))). ( -22.60)
>consensus
UGGUCUUAUGUACCAAAAGUCAUUAGCCUGUGGAUGACAAAUAAUUAUUCUAUUUUCCACCCCUUGUCAUCUGUCAUUGUCUGGCAUUUAAAUUACUGAUGACUUUAAUUAUAG
((((.......))))(((((((((((.....(((((((((.......................)))))))))((((.....))))..........)))))))))))........ (-19.40 = -20.40 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:50 2006