Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,274,548 – 2,274,644 |
Length | 96 |
Max. P | 0.710524 |
Location | 2,274,548 – 2,274,644 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 94.55 |
Mean single sequence MFE | -23.75 |
Consensus MFE | -20.29 |
Energy contribution | -20.43 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.11 |
Mean z-score | -1.68 |
Structure conservation index | 0.85 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.710524 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2274548 96 - 22407834 UUUUUCCCC--UCUGCCUUCUGCGGUUUGCUUCCACUGGGCUCUUUUUGCCAUCCAUUGUCCUGGAUUGUGGUCACAGGGUUUAAAGUUUAAGCAAUU .........--.((((.....)))).((((((..(((.((((((..(..(.(((((......))))).)..)....))))))...)))..)))))).. ( -22.90) >DroSec_CAF1 10827 96 - 1 UUUUUCCAC--UCUGCCUUCUGCGGUUUGCUUCCACUGGGCUCUUUUUGCCAUCCAUUGUCCUGGAUUGUGGUCACAGGGUUUAAAGUUUAAGCAAUU .........--.((((.....)))).((((((..(((.((((((..(..(.(((((......))))).)..)....))))))...)))..)))))).. ( -22.90) >DroSim_CAF1 10813 96 - 1 UUUUUCCAC--UCUGCCUUCUGCGGUUUGCUUCCACUGGGCUCUUUUUGCCAUCCAUUGUCCUGGAUUGUGGUCACAGGGUUUAAAGUUUAAGCAAUU .........--.((((.....)))).((((((..(((.((((((..(..(.(((((......))))).)..)....))))))...)))..)))))).. ( -22.90) >DroEre_CAF1 10868 96 - 1 UUUUUCCAC--UCUGCCUUCUGCGGUUUGCUUCCACUGGGCUCUUUUUACCAUCCAUUGUCCUGGAUUGUGGUCACAGGGUUUAAAGUUUAAGCAAUU .........--.((((.....)))).((((((..(((.((((((..((((.(((((......))))).))))....))))))...)))..)))))).. ( -22.70) >DroYak_CAF1 11054 96 - 1 UUUUUCCAC--UCUGCCUUCUGCGGUUUGCUGCCACUGGGCUCUUUUUCCCAUCCAUUGUCCUGGAUUGUGGUCACAGGGCUUAAAGUUUAAGCAAUU .........--.((((.....)))).(((((...(((.((((((....((((((((......)))).)).))....))))))...)))...))))).. ( -24.40) >DroAna_CAF1 10349 98 - 1 UUUUUCAACUCUCUGCCCUUUGCGGUUUGCUUCCACAGGGCUCCUUUGGCCAUCCAUUGUCCUGGCUUGUGGUCACGGGGUUUAAAGUUUAAACAAUU ..............(((((.((.((......)))).))))).(((.((((((((((......)))...))))))).)))(((((.....))))).... ( -26.70) >consensus UUUUUCCAC__UCUGCCUUCUGCGGUUUGCUUCCACUGGGCUCUUUUUGCCAUCCAUUGUCCUGGAUUGUGGUCACAGGGUUUAAAGUUUAAGCAAUU ............((((.....)))).((((((..(((.((((((....((((((((......)))...)))))...))))))...)))..)))))).. (-20.29 = -20.43 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:49 2006