Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,270,209 – 2,270,315 |
Length | 106 |
Max. P | 0.936870 |
Location | 2,270,209 – 2,270,315 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 77.37 |
Mean single sequence MFE | -21.54 |
Consensus MFE | -13.48 |
Energy contribution | -14.64 |
Covariance contribution | 1.16 |
Combinations/Pair | 1.15 |
Mean z-score | -2.06 |
Structure conservation index | 0.63 |
SVM decision value | 1.26 |
SVM RNA-class probability | 0.936870 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2270209 106 - 22407834 CCGGGCACACCAUAAAUACUUCGAAUAUC----------CGGCGAACAAACAACAGCAGGAGAUUGCAUAAAUCUCCAGUUGGAAGGGAUGAAAAAA--AGAAUAAAGGGAAUGGAAA ((((.....))..............((((----------((.....)......((((.(((((((.....))))))).))))....)))))......--........))......... ( -22.20) >DroSec_CAF1 6556 105 - 1 CCGGAUAGACCAUA-AUACUUCGAAUAUC----------CGGCGAACAAACAACAGCAGGAGAUUGCAUAAAUCUCCAGUUGGAAGGGAUGAAAAAA-AAAUAUAAAGGGAAA-GAAA (((((((.......-..........))))----------)))....((..(..((((.(((((((.....))))))).))))....)..))......-...............-.... ( -23.13) >DroSim_CAF1 6580 107 - 1 CCGGAUAGACCAUAAAUACUUCGAAUAUC----------CGGCGAACAAACAAUAGCAGGAGAUUGCAUAAAUCUCCAGUUGGAAGGGAUGAAAAAAAAAAAAUAAAGGGAAA-GAAA (((((((..................))))----------)))....((..(..((((.(((((((.....))))))).))))....)..))......................-.... ( -21.27) >DroEre_CAF1 6598 110 - 1 CCGGGCAGACCAUAAAUACUUCGAAUAUCCUUCGUACUUCGGCGAACAAACAACAGCAGGAGAUUGCAUAAAUCUCCAGUUGGAAGGGAUGAA--------AAAAUUGGGAAAGGAAA ((((.....))..............((((((((((......))))........((((.(((((((.....))))))).))))...))))))..--------......))......... ( -26.50) >DroAna_CAF1 6876 85 - 1 CCGGGCCGACCGUAAAUACUUCGAAUAUC----------CGACAAACAAACAGUAGCAGGAGAUUGCAUAAAUCUUCGCC-----------AA---AAAA-----AAGAGAAG-G--- .(((.....)))......((((.......----------......((.....)).((.(((((((.....))))))))).-----------..---....-----....))))-.--- ( -14.60) >consensus CCGGGCAGACCAUAAAUACUUCGAAUAUC__________CGGCGAACAAACAACAGCAGGAGAUUGCAUAAAUCUCCAGUUGGAAGGGAUGAAAAAA_AA_AAUAAAGGGAAA_GAAA ((((.....)).......((((..................(.....)......((((.(((((((.....))))))).)))))))).....................))......... (-13.48 = -14.64 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:48 2006