Locus 790

Sequence ID 2L_DroMel_CAF1
Location 2,258,697 – 2,258,789
Length 92
Max. P 0.588479
window1292

overview

Window 2

Location 2,258,697 – 2,258,789
Length 92
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 82.65
Mean single sequence MFE -25.48
Consensus MFE -15.93
Energy contribution -17.85
Covariance contribution 1.92
Combinations/Pair 1.11
Mean z-score -2.07
Structure conservation index 0.63
SVM decision value 0.11
SVM RNA-class probability 0.588479
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2258697 92 + 22407834
AGCUCACAAAGCGAGCCAAUACAAAUAUUGUUUUCCCUGGGUUUCGGCAUUUUUAC---GAUACC----UUCCCCUCAAGGUUGCCAGGAUACCGGGGU
.((((.......))))(((((....)))))....(((((((((..((((.......---...(((----((......)))))))))..))).)))))). ( -26.30)
>DroSec_CAF1 19447 92 + 1
AGCUCACAAAGCGAGCCAAUACAAAUAUUGUUUUCCCUGGGUUUCGGCAUUUUUAC---GAUAGC----UUCCCUUCAAGGAUGCCAGGAUACCGGGGA
.((((.......))))(((((....)))))...((((((((((..(((((((((..---((....----......)))))))))))..))).))))))) ( -28.50)
>DroSim_CAF1 20465 92 + 1
AGCUCACAAAGCGAGCCAAUACAAAUAUUGUUUUCCCUGGGUUUCGGCAUUUUUAC---GAUAGC----UUCCCUUCAAGGAUGCCAGGAUACCGGGGA
.((((.......))))(((((....)))))...((((((((((..(((((((((..---((....----......)))))))))))..))).))))))) ( -28.50)
>DroEre_CAF1 20955 91 + 1
AGCUCACAAAGCGAGCCAAUACAAAUAUUGUUUUCCCUGGGUUUCGGCAUUUUUAC---GAUACA----UUCGCUUCAAGGAUACCAGGAUGCCAGGG-
.((((.......))))(((((....)))))....(((((((((..((.((((((.(---((....----.)))....)))))).))..))).))))))- ( -23.20)
>DroYak_CAF1 27147 98 + 1
AGCUCACAAAGCGAGCCAAUACAAAUAUUGUUUUCCCUGGGUUUCGGCAUUUUUACAAGGAUACAAGCGUACCCUUCAAGGAUGCCAGGAUACCAAGU-
.((((.......))))(((((....))))).......((((((..(((((((((..((((.(((....))).)))).)))))))))..))).)))...- ( -26.00)
>DroAna_CAF1 22512 85 + 1
A-CUCUCAAAGCGAGCCAAUACAAAUAUUGUUUUCCUCUCGAUUCACAAUUUUUGU---GUUACU----UUUC--UGAAAGCAGAAAGGAAAGCA----
.-........((.....((((((((.(((((..((.....))...))))).)))))---))).((----((((--((....))))))))...)).---- ( -20.40)
>consensus
AGCUCACAAAGCGAGCCAAUACAAAUAUUGUUUUCCCUGGGUUUCGGCAUUUUUAC___GAUACC____UUCCCUUCAAGGAUGCCAGGAUACCAGGG_
.((((.......))))(((((....)))))....((((((..((((((((((((.......................))))))))).)))..)))))). (-15.93 = -17.85 +   1.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:41 2006