| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,255,461 – 2,255,567 |
| Length | 106 |
| Max. P | 0.665158 |
| Location | 2,255,461 – 2,255,567 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 88.57 |
| Mean single sequence MFE | -30.68 |
| Consensus MFE | -24.62 |
| Energy contribution | -25.48 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.665158 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2255461 106 - 22407834 -----ACCAUGCACCCCACGGGGCGUAUGAUUAAUGCAAUUU-CCUGUUGCCGACAGGCAAGUCAGUGUCAGCGGAAGCACAAUGCAUUUAUUAAUGAAUAACAAAUCAAUU -----..(((((.(((....))).)))))...((((((....-.((((((((....)))))..))).....((....))....))))))....................... ( -30.80) >DroSec_CAF1 16156 106 - 1 -----ACCAUGCACCCCACGGGGCGUAUGAUUAAUGCAAUUU-ACUGUUGCCGACAGGCAAGUCAGUGUCAGCGGAAGCACAAUGCAUUUAUUAAUGAAGAACAAAUCAAUU -----..(((((.(((....))).)))))...((((((...(-(((((((((....)))))..)))))...((....))....))))))....................... ( -33.40) >DroSim_CAF1 17187 106 - 1 -----ACCAUGCACCCCACGGGGCGUAUGAUUAAUGCAAUUU-CCUGUUGCCGACAGGCAAGUCAGUGUCAGCGGAAGCACAAUGCAUUUAUUAAUGAAGAACAAAUCAAUU -----..(((((.(((....))).)))))...((((((....-.((((((((....)))))..))).....((....))....))))))....................... ( -30.80) >DroEre_CAF1 17692 105 - 1 -----ACCAUGCACCCCACGGGGCGUAUGAUUAAUGCAAUUG-UGUGUUGCCGACAGGCAAGUCAGUGUCAGCGGAAGCACAAUGCAUUUAUUGAUGAAGAACAAAUCAAU- -----..(((((.(((....))).)))))...((((((.(((-(((....(((...((((......))))..)))..)))))))))))).((((((.........))))))- ( -35.20) >DroYak_CAF1 23751 110 - 1 CGAACACCAUGCACCCCACGGGGCGUAUGAUUAAUGCAAUUU-UCUGUUGCCGACAGGCAAGUCAGUGUCAACGGAAGCACAAUGCAUUUAUUAAUGAACAACAAAUCAGC- .((....(((((.(((....))).)))))...((((((....-....(((((....)))))....((((........))))..)))))).................))...- ( -28.30) >DroAna_CAF1 19162 107 - 1 -----AACUUACGGCCCACGGGGCGUAUGAUUAAUGCAGUUUGAAUUUCGCCAGCAGGCAUCUCAACGUCAGCGGAAGGACAAUGCAUUUAUUAAUGAAGAGCACAUCAUUC -----....((((.((....)).))))((((.((((((..(((..(((((((....))).......((....))))))..))))))))).))))((((........)))).. ( -25.60) >consensus _____ACCAUGCACCCCACGGGGCGUAUGAUUAAUGCAAUUU_ACUGUUGCCGACAGGCAAGUCAGUGUCAGCGGAAGCACAAUGCAUUUAUUAAUGAAGAACAAAUCAAUU .......(((((.(((....))).)))))...((((((.........(((((....)))))..........((....))....))))))....................... (-24.62 = -25.48 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:38 2006