Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,250,594 – 2,250,714 |
Length | 120 |
Max. P | 0.767909 |
Location | 2,250,594 – 2,250,714 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.33 |
Mean single sequence MFE | -47.42 |
Consensus MFE | -36.20 |
Energy contribution | -37.20 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.12 |
Mean z-score | -1.82 |
Structure conservation index | 0.76 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.767909 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2250594 120 - 22407834 GCGCCGCCGCUCUCUUAAAAGAUUCCUGUCAUGGAGACUCCGGCGGACCUCUCGUCUCCGGUGGCCAACUAGUUGGCAUUGUCUCCUACGGCAUUGGAUGCGCCAAUCCGUUCUUUCCCG (((....))).......(((((..........((((((.((((.((((.....))))))))..(((((....)))))...)))))).((((.(((((.....)))))))))))))).... ( -40.30) >DroSec_CAF1 10680 120 - 1 GGACCGCCGCUCUCGGAAGGGAUUCAUGUCGUGGAGACUCCGGCGGACCUCUCGUCUCCGGUGGCCAACUAAUUGGCAUUGUCUCCUACGGCAAAGGGUGCGCCAAUCCCUUCUUCCCCG ((....))......((((((((((..((((((((((((.((((.((((.....))))))))..(((((....)))))...)))))).))))))...((....))))))))))))...... ( -49.90) >DroSim_CAF1 11063 120 - 1 GCGCCGCCGCUCUCGGAAGAGAUGCCUGUCGUGGAGACUCCGGCGGACCUCUCGUCUCCGGUGGCCAACUAGUUGGCAUUGUCUCCUACGGCAUAGGGUGCGCCAAUCCCUUCUUCCCCG ((((.(((((((((....)))).)).((((((((((((.((((.((((.....))))))))..(((((....)))))...)))))).))))))...)))))))................. ( -54.70) >DroEre_CAF1 10817 120 - 1 GCGCCGCCGCUCUCGGAAAGGAUUCCUGUCAAGGAGACUCCGGAGGACCACUCGUCUCCGGUGGCCAACUGGUUGGCAUUGUCUCCUUUGGCUACGGCUGCGCAAAUCCUUUCUUCCCCG ((((.((((.....((((....)))).(((((((((((.(((((((........)))))))..(((((....)))))...)))))).)))))..)))).))))................. ( -51.90) >DroYak_CAF1 12407 120 - 1 GCGCCGCCGCUCUCCUAAAGGAUUCCUGCCAAGGAGACUCCGGAGGACCUCUCGUCUCCGGUGGCCAACUGGUUGGCAUUGUGUCCCACGGCAUGUUGUGCGCAAUUCCCUUCUACCCCG ((((.((.((..(((....)))....((((..(((.((.(((((((........)))))))..(((((....)))))...)).)))...)))).)).))))))................. ( -40.30) >consensus GCGCCGCCGCUCUCGGAAAGGAUUCCUGUCAUGGAGACUCCGGCGGACCUCUCGUCUCCGGUGGCCAACUAGUUGGCAUUGUCUCCUACGGCAUAGGGUGCGCCAAUCCCUUCUUCCCCG ((((..((..(((......)))....((((((((((((.((((.((((.....))))))))..(((((....)))))...)))))).))))))..))..))))................. (-36.20 = -37.20 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:37 2006