Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,238,169 – 2,238,268 |
Length | 99 |
Max. P | 0.804385 |
Location | 2,238,169 – 2,238,268 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 76.05 |
Mean single sequence MFE | -17.99 |
Consensus MFE | -11.77 |
Energy contribution | -12.58 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.21 |
Mean z-score | -1.43 |
Structure conservation index | 0.65 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.804385 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2238169 99 - 22407834 -----AAUUGUUACAUUACACAC---UUCAUCAAAGAAACACUACACGAAAUUAUUGUAAGGCCCACUUAUGUCCUUUAGCGAAUCAAAUGUUCAUCAGUGGGCUUU -----..................---...................((((.....))))((((((((((.(((..(...............)..))).)))))))))) ( -17.06) >DroSec_CAF1 20448 99 - 1 -----AAUUGUUACAUUACACAC---UUCAUCAAAGAAACACUAUACGAAAUUAUUGUAAGGCCCACUUAUGUCCUUUCACGAAUCAAGUGUUCAUCAGUGGGCUUU -----..................---..................(((((.....)))))(((((((((.(((......(((.......)))..))).))))))))). ( -19.70) >DroSim_CAF1 22316 99 - 1 -----AAUUGUUACAUUACACAC---UUCAUCAAAGAAACACUAUACGAAAUUAUUGUAAGGCCCACUUAUGUCCUUUCACGAAUCAAGUGUUCAUCAGUGGGCUUU -----..................---..................(((((.....)))))(((((((((.(((......(((.......)))..))).))))))))). ( -19.70) >DroEre_CAF1 19758 92 - 1 ------------ACAUUCUACAU---GUUAUCAAGGAAACACUACUCGAAAUUAUUGUAAGGCCCAUUUAUGUCCAUCAACGAAUCAAGAGUUCAUCAGUGGGCCUU ------------...........---........(....)..................((((((((((.(((..(.((..........)))..))).)))))))))) ( -19.70) >DroYak_CAF1 19430 99 - 1 -----AAUUGCUACAUUCUACAU---GUUAUCAAGGCAACACUACUCGAAAUUAUUGUAAGGCCCAUUUAUGUCCAUCAACGAAUCACGAGUUCAUCAGUGGGCCUU -----..(((((((((.....))---))......)))))...................((((((((((.(((..(.((..........)))..))).)))))))))) ( -21.30) >DroAna_CAF1 18774 104 - 1 UGAUUAAUU-UAACACAAUACGAUUAUUGGGCAACGAAAUA--AGUCAAAAUUAUUGUAAACAUCAAAAAUGUCCUUCAACGAUUGGAAACCACAUCAAUAUGCUAU (((((.(((-(....(((((....)))))(....).)))).--))))).(((..(((...((((.....))))....)))..)))(....)................ ( -10.50) >consensus _____AAUUGUUACAUUACACAC___UUCAUCAAAGAAACACUACACGAAAUUAUUGUAAGGCCCACUUAUGUCCUUCAACGAAUCAAGAGUUCAUCAGUGGGCUUU ..........................................................((((((((((.(((..(...............)..))).)))))))))) (-11.77 = -12.58 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:30 2006