| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 22,154,329 – 22,154,449 |
| Length | 120 |
| Max. P | 0.506597 |
| Location | 22,154,329 – 22,154,449 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.83 |
| Mean single sequence MFE | -38.57 |
| Consensus MFE | -24.34 |
| Energy contribution | -25.37 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.63 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.506597 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 22154329 120 - 22407834 AUCAUAGGCGCAUUCACACGGGCGAAAAGCCAUACAAGUGUGAAAUUUGUGGAUCGGCCUUUUCUCAGGCGGCGCACCUUAAGAACCACGCAAAGGUGCACUCCGGAGAAAAACCCUACA ....(((((((((((((((.(((.....)))......)))))))...))))........(((((((.((.((.(((((((............))))))).)))).)))))))..)))).. ( -40.00) >DroVir_CAF1 174 120 - 1 ACCAUCGCCGCAUACACACCGGCGAGAAGCCUUACAAGUGUGAAAUAUGCGGCUCGGCUUUUUCACAGGCGGCACAUCUGAAGAACCACGCCAAGGUGCACUCCGGCGAGAAGCCUUAUA ......(((((((((((((..(..((....))..)..)))))...))))))))..((((((((..(.((((.....((....))....))))..((......)))..))))))))..... ( -41.10) >DroGri_CAF1 186 120 - 1 AUCAUCGUCGCAUACACACCGGCGAGAAGCCGUACAAGUGCGAAAUAUGCGGCUCGGCCUUUUCGCAGGCGGCACAUCUGAAGAACCAUGCCAAGGUGCACUCCGGCGAGAAGCCGUACA ......(((((((((.(((((((.....)))).....))).)...)))))))).((((.(((((((.((.(((((...((...........))..)))).).)).))))))))))).... ( -42.80) >DroWil_CAF1 186 120 - 1 AUCACCGACGUAUUCACACUGGCGAGAAGCCAUAUAAAUGCGAUAUAUGCGGAUCGGCAUUCUCGCAGGCAGCGCAUCUUAAGAACCACGCCAAGGUGCAUUCAGGCGAGAAGCCAUAUA ....(((.(((((((.((.((((.....))))......)).)).))))))))...(((.(((((((..(.((.(((((((............))))))).)))..))))))))))..... ( -37.80) >DroMoj_CAF1 186 120 - 1 ACCAUCGCCGCAUUCACACAGGUGAAAAGCCAUACAAGUGUGAGAUAUGCGGUUCGGCUUUCUCACAGGCGGCACAUCUGAAGAAUCACGCCAAGGUGCACUCUGGCGAAAAACCGUAUA ......(((((.(((((....)))))............(((((((...((......))..))))))).)))))...............(((((..(....)..)))))............ ( -37.30) >DroAna_CAF1 186 120 - 1 ACCAUAGGCGAAUUCACACAGGCGAAAAGCCGUAUAAGUGUGAGAUUUGUGGUUCGGCAUUCUCGCAGGCUGCGCAUCUAAAAAACCAUGCCAAGGUCCAUUCCGGUGAAAAGCCAUACA ......(((...(((((....(((...((((.......(((((((..(((......))).))))))))))).)))...................((......)).)))))..)))..... ( -32.41) >consensus ACCAUCGCCGCAUUCACACAGGCGAAAAGCCAUACAAGUGUGAAAUAUGCGGAUCGGCAUUCUCGCAGGCGGCACAUCUGAAGAACCACGCCAAGGUGCACUCCGGCGAAAAGCCAUACA ........(((((((((((.(((.....)))......))))))...)))))....(((.(((((((.((.(((((.......(.....)......)))).).)).))))))))))..... (-24.34 = -25.37 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:39 2006