Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 22,150,439 – 22,150,555 |
Length | 116 |
Max. P | 0.727758 |
Location | 22,150,439 – 22,150,555 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.13 |
Mean single sequence MFE | -47.02 |
Consensus MFE | -25.36 |
Energy contribution | -26.33 |
Covariance contribution | 0.98 |
Combinations/Pair | 1.32 |
Mean z-score | -2.04 |
Structure conservation index | 0.54 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.727758 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 22150439 116 + 22407834 GACAAUGAGCUAACGAAGCUUCCAUCAGCAGCGGAUGGCG---GCAAUCGAGUUACUACCAUAGAUGUAGGAUCUACUUCGGCUCUUGUGCAACUGGAACUGGGCGAUGAUCAGAUUUG- .((((.(((((..(((.(((.(((((.......))))).)---))..))).............((.((((...)))).)))))))))))..........((((.......)))).....- ( -27.40) >DroVir_CAF1 35173 113 + 1 GACAGCGAGUUCAUCAAACUGCCAUCGGCGGCGGAUGGUGGCGGAAAUCGUGUGACCACCAUCGAUGUCGGCUCGCCGGCAGCUCUCGCUCAGCUGGA------CGAUGAUGAGCUCCU- ...((.((((((((((....(((...((((...((((((((((.(.....).)).))))))))..)))))))(((((((((((....)))..))))).------)))))))))))))))- ( -48.70) >DroPse_CAF1 53525 111 + 1 GACAGCGAGUUCAUCAAGCUGCCUUCCGCAGCCGACGGCG---GUAAUCGGGUGACCACCAUCGAUGUCGGCUCGCCGGCAGCUCUCGCCAAGCUGGA------UGAUGAUGAGCUGCUG ..((((.((((((((((((((((...((.((((((((.((---((....((....))...)))).))))))))))..))))))).(((((.....)).------)))))))))))))))) ( -56.00) >DroGri_CAF1 37750 113 + 1 GACAGUGAGUUCAUCAAGCUGCCCUCGGCGGCAGAUGGUGGUGGCAAUCGUGUGACCACCAUUGAUGUCGGCUCCCCCGCCGCCCUCGCCCAGCUGGA------CGAUGAUGAGCUGCU- ...(((.((((((((((((((.....((((((.(((((((((.(((....))).)))))))))......((.....))))))))......)))))...------...))))))))))))- ( -49.50) >DroWil_CAF1 42394 113 + 1 GAUAGCGAGUUCAUCAAGCUGCCAUCGGCCGCAGAUGGCGGUGGCAAUCGUGUUACCACCAUUGAUGUCGGCUCUCCGGCUGCUUUGGCUCAACUGGA------UGAUGAUGAGCUGCU- ...(((.(((((((((.((.(((...((((((((((((.(((((((....))))))).)))))..)).)))))....))).))((..(.....)..))------...))))))))))))- ( -46.60) >DroPer_CAF1 53447 111 + 1 GACAGCGAGUUCAUCAAGCUGCCUUCCGCAGCCGAUGGCG---GUAAUCGGGUGACCACCAUCGAUGUCGGCUCGCCGGCAGCUCUCGCCAAGCUGGA------UGAUGAUGAGCUGCUG ..((((.((((((((((((((((...((.(((((((..((---((....((....))...))))..)))))))))..))))))).(((((.....)).------)))))))))))))))) ( -53.90) >consensus GACAGCGAGUUCAUCAAGCUGCCAUCGGCAGCAGAUGGCG___GCAAUCGUGUGACCACCAUCGAUGUCGGCUCGCCGGCAGCUCUCGCCCAGCUGGA______CGAUGAUGAGCUGCU_ ...(((.(((((((((.(((((.....)))))....((((...((.((((.((....))...))))(((((....))))).))...)))).................)))))))))))). (-25.36 = -26.33 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:36 2006