Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,234,645 – 2,234,765 |
Length | 120 |
Max. P | 0.610854 |
Location | 2,234,645 – 2,234,765 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.22 |
Mean single sequence MFE | -44.82 |
Consensus MFE | -27.32 |
Energy contribution | -26.68 |
Covariance contribution | -0.63 |
Combinations/Pair | 1.42 |
Mean z-score | -1.56 |
Structure conservation index | 0.61 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.610854 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2234645 120 + 22407834 AGGAGCGCAGGAAGCGGGGUGAAGAGUUGCCUUGGUCGUGAACCACGAAUUUGGUGGUCACCAAUGGAGGCAGCAAUCCUGGCUGGUUGGUCACAAACGGUCCUCCAGACAAUCGCUGGU ...((((...(...((((((.....((((((((.((.((((.((((.......))))))))..)).)))))))).)))))).((((..(..(......)..)..)))).)...))))... ( -43.50) >DroVir_CAF1 195722 120 + 1 AGGAGCGUAUAAAGCGCGGCGAGGAAUUGCCCUGAUCGUGGACGACAAACUUCGUGGUCACCAGCGGCGGCAAUAGGCCAGCCUGAUUGGUCACAAAUGGACCUCCAGCGGCUUGCUGAU ....((((.....))))(((((....))))).((((((((((........)))))))))).(((((((.((....((((((.....)))))).....(((....))))).)).))))).. ( -40.60) >DroGri_CAF1 196063 120 + 1 AAGAGCGUAUGAAGCGCGGCGAGGAGUUGCCCUGAUCGUGGACCACAAACUUGGUGGUGACCAGUGGUGGCAACAGGCCAGCCUGAUUGGUCACAAAGGCACCGCCGGCCGUUUGCUGAU ...((((.(((..((.((((((((......)))....(((.((((......)))).(((((((((((((((.....)))).))..))))))))).....))))))))))))).))))... ( -45.40) >DroWil_CAF1 28078 120 + 1 AGGAACGUAGAAAACGUGGCGAUGAGUUGCCCUGAUCGUGAACUACGAAUUUCGUGGUGACCAAUGGCGGCAGAAGGCCAGGCUGAUUGGUCACAAAAGGACCACCGGCCAAACGUUGAU ...(((((........((((.....((((((......((..((((((.....)))))).))....)))))).....))))(((((..(((((.......))))).)))))..)))))... ( -39.50) >DroMoj_CAF1 221930 120 + 1 AGGAGCGUAUGAAGCGCGGUGAGGAAUUGCCCUGAUCGUGCACCACAAACUUUGUGGUUACCAGCGGCGGCAAUAGGCCCGGCUGGUUUGUUACAAAGAUUCCACCGGCUGCUUGCUGAU .((((........(((((((.(((......))).)))))))........((((((((..((((((.(.(((.....)))).))))))...)))))))).))))..((((.....)))).. ( -49.80) >DroAna_CAF1 15292 120 + 1 AAGAGCGCAUGAAGCGAGGAGAGGAGUUGCCUUGGUCGUGGACCACAAACUUUGUGGUCACCAAUGGAGGCAACAGACCCGGCUGAUUGGUCACAAACGGGCCACCGGCCAAGCGCUGAU ...(((((............(.((.((((((((.((.(..(((((((.....)))))))..).)).))))))))...)))(((((..(((((.......))))).)))))..)))))... ( -50.10) >consensus AGGAGCGUAUGAAGCGCGGCGAGGAGUUGCCCUGAUCGUGGACCACAAACUUCGUGGUCACCAAUGGCGGCAACAGGCCAGGCUGAUUGGUCACAAACGGACCACCGGCCAAUCGCUGAU ....((((.....))))((......(((((((((...(((.(((((.......))))))))...))).)))))).((((.........)))).........))..((((.....)))).. (-27.32 = -26.68 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:29 2006