Locus 7814

Sequence ID 2L_DroMel_CAF1
Location 22,125,370 – 22,125,490
Length 120
Max. P 0.616211
window12523

overview

Window 3

Location 22,125,370 – 22,125,490
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 80.24
Mean single sequence MFE -18.37
Consensus MFE -12.45
Energy contribution -12.57
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -1.65
Structure conservation index 0.68
SVM decision value 0.17
SVM RNA-class probability 0.616211
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 22125370 120 + 22407834
AGUGAAAAAAGUCAAUGAACCCAUGCUGUAUGGUACAAUUGCCUCUUUUUUCAUUGCUUUUUCCCAGCAACACAAUACAAGAAAUUAUAACAGAAAGGACCAUAUAUUUUUCAAAAACAC
(((((((((((.((((....(((((...)))))....))))...)))))))))))(((.......)))........................((((((........))))))........ ( -17.60)
>DroSec_CAF1 19887 94 + 1
AGUGAAAAAAGUCAAUGAACCCAUUAACUAUGGUACAAUUGGCUCUUU-UUCAUUGC----UCCCAGCAACACAAUACAAGAAAUUAUAACGGAAAGGA---------------------
((((((((((((((((....((((.....))))....))))))).)))-))))))((----.....))...............................--------------------- ( -18.60)
>DroSim_CAF1 20315 94 + 1
AGUGAAAAAAGUCAAUGAACCCAUUAACUGUGGUACAAUUGGCUCUUU-UUCAUUGC----UCCCAGCAACACAAUACAAGAAAUUAUAACGGAAAGGA---------------------
((((((((((((((((....((((.....))))....))))))).)))-))))))((----.....))...............................--------------------- ( -18.90)
>consensus
AGUGAAAAAAGUCAAUGAACCCAUUAACUAUGGUACAAUUGGCUCUUU_UUCAUUGC____UCCCAGCAACACAAUACAAGAAAUUAUAACGGAAAGGA_____________________
.(((.(((.(((((((....((((.....))))....))))))).))).....((((.........)))))))............................................... (-12.45 = -12.57 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:28 2006