Locus 7813

Sequence ID 2L_DroMel_CAF1
Location 22,125,214 – 22,125,334
Length 120
Max. P 0.829335
window12522

overview

Window 2

Location 22,125,214 – 22,125,334
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 94.44
Mean single sequence MFE -30.67
Consensus MFE -27.13
Energy contribution -27.80
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.29
Structure conservation index 0.88
SVM decision value 0.71
SVM RNA-class probability 0.829335
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 22125214 120 - 22407834
UAUUUCGGUAUUGUUGUGGCCCUAGUAGUAAUUGGCAACGUCCCACAUUUUUAAGCAUAAAGCCCAAAAGAGGAAAAAAUUUACAAAGCCACAAUACCGAGACUAACAUACCCUUACUGC
..(((((((((...((((((....((((.....(....).(((....(((((..((.....))..))))).)))......))))...))))))))))))))).................. ( -24.80)
>DroSec_CAF1 19727 120 - 1
UAUUUCGGUAUUGUUGUGGCCCUAGUGGUAAUUGGCAACGUCCCACAUUUUUAAGCAUUAGGCCGAAAAGAGGAAAAAGUUUCAAAAGCAACAAUACCGAGACUAGCAUACCCUUACUGA
..(((((((((((((((((((...((((....((....))..)))).....((.....)))))).......((((....))))....))))))))))))))).................. ( -33.60)
>DroSim_CAF1 20155 120 - 1
UAUUUCGGUAUUGUUGUGGCCCUAGUGGUAAUUGGCAACGUCCCACAUUUUUAAGCAUUAGGCCGAAAAGAGGAAAAAAUUUCAAAAGCAACAAUACCGAGACUAGCAUACCCUUACUGA
..(((((((((((((((((((...((((....((....))..)))).....((.....)))))).......((((....))))....))))))))))))))).................. ( -33.60)
>consensus
UAUUUCGGUAUUGUUGUGGCCCUAGUGGUAAUUGGCAACGUCCCACAUUUUUAAGCAUUAGGCCGAAAAGAGGAAAAAAUUUCAAAAGCAACAAUACCGAGACUAGCAUACCCUUACUGA
..(((((((((((((((.......((((....((....))..)))).(((((..((.....))..))))).................))))))))))))))).................. (-27.13 = -27.80 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:27 2006