| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 22,109,539 – 22,109,629 |
| Length | 90 |
| Max. P | 0.530192 |
| Location | 22,109,539 – 22,109,629 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 79.34 |
| Mean single sequence MFE | -31.60 |
| Consensus MFE | -20.20 |
| Energy contribution | -19.12 |
| Covariance contribution | -1.08 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.64 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.530192 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 22109539 90 + 22407834 --GCGAACCGACACCUCGGUCCUGAUGCGGCUGAAGAGCGACGCCCGGAGCUCUUAGUCAGCCAAGUCAAUUGUGGGACCGGUGUAAAUACA --........(((((..(((((((((..(((((((((((..(....)..)))))...))))))..)))......)))))))))))....... ( -35.70) >DroSec_CAF1 137 90 + 1 --GCAAACCGACACCGCGGUCCUGAUGCGGCAGAAGAGCGACACCCGGAGCUCUUAGUCAGCCAAGUCAAUUGUGGGACCGGUGUAAAGACA --....((((...(((((((..((((..(((..((((((..(....)..)))))).....)))..)))))))))))...))))......... ( -30.70) >DroSim_CAF1 299 90 + 1 --GCAAACCGACACCGCGGUCCUGAUGCGGCAGAAGAGCGACGCCCGGAGCUCUUAGUCAGCCAAGUCAAUUGUGGGACCGGUGUAAAGACA --....((((...(((((((..((((..(((..((((((..(....)..)))))).....)))..)))))))))))...))))......... ( -31.20) >DroEre_CAF1 33220 90 + 1 --GCGACGCAGUACCACGGUCCUGAUGCGGCUGAUGAGGGACGUUCGGUGCUCUUACUCAGCCAAGUCAAUUGUGGGACCAGUGUAAAGACA --...((((.((.(((((((..((((..((((((((((((((.....)).)))))).))))))..))))))))))).))..))))....... ( -32.80) >DroYak_CAF1 9789 90 + 1 --GCGACGCGGUACCGCAGUUCUGAUGCGGCUGACGAGCAGUUCCCGGAGCUCUUACUCAGCCAAGUCAAUUGUGGGACCGGUGUAAAGACA --...(((((((.(((((((..((((..((((((.(((.(((((...))))))))..))))))..))))))))))).))).))))....... ( -35.30) >DroAna_CAF1 2840 92 + 1 UAGUCAGCAAAUACAACAGUCCCGAUGCGGCGGACGGCCACCAACCGGAGCUCGUACUCAGACCAAUCGAUUGUUCGACGGGGGCAGCAACA ..................(((((((((((((...(((.......)))..)).)))).)).......((((....))))..)))))....... ( -23.90) >consensus __GCGAACCGACACCGCGGUCCUGAUGCGGCUGAAGAGCGACGCCCGGAGCUCUUACUCAGCCAAGUCAAUUGUGGGACCGGUGUAAAGACA ..(((........(((((((..((((..(((..((((((..(....)..)))))).....)))..)))))))))))......)))....... (-20.20 = -19.12 + -1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:26 2006