Locus 7810

Sequence ID 2L_DroMel_CAF1
Location 22,092,679 – 22,092,778
Length 99
Max. P 0.620266
window12515

overview

Window 5

Location 22,092,679 – 22,092,778
Length 99
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 64.57
Mean single sequence MFE -27.30
Consensus MFE -15.34
Energy contribution -14.95
Covariance contribution -0.39
Combinations/Pair 1.33
Mean z-score -1.22
Structure conservation index 0.56
SVM decision value 0.18
SVM RNA-class probability 0.620266
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 22092679 99 - 22407834
GUCCUGGCUAUCGCAGUCCCUUGCGAUACACAAAAAUGCUUCGUGAGAUGAACUCUCGCAACGGGCUUUAGUAUGUAUAUAU---ACAA--------------UAUAUUCCU---CGAA
((((((..((((((((....))))))))..))..........((((((.....))))))...))))....(((((....)))---))..--------------.........---.... ( -24.80)
>DroVir_CAF1 4805 119 - 1
GUCCCGGCUACCGCAGCCCACUGCGAUACACAAAAGUCUUAAGAGAAAUGAACUCGCGCAACGGACUCUAGUAGGUGCAUCCGAUAUUUUAGUCCAAUCUUAAUAUGGAAUACCCUCUU
((((..((...(((((....))))).................(((.......)))..))...))))...((..((((..(((.(((((..((......)).)))))))).))))..)). ( -25.60)
>DroPse_CAF1 27933 112 - 1
GACCCGGCUAUCGCAGUCCCCUGCGAUACAAUAAGAUGCUCAAAGAGAUGAACUCUCGCAAUGGUCUUUAGUAAGUCUAA-G---AUCUUGG---GCACAUACUAGCUCCCACGUUUAU
((((..((((((((((....))))))))................((((.....))))))...)))).((((((.((((((-.---...))))---))...))))))............. ( -29.90)
>DroGri_CAF1 18334 108 - 1
GUCCCGGCUAUCGCAGCCCCCUGCGUUACACCAAGGUCAUGCGAGAGAUGAACUCUCGCAACGGACUCUAGUAAGAAAAACUGUUAUUUG-------UUUGA----AGAGCACCCCCUU
((((.((....(((((....))))).....)).......((((((((.....))))))))..))))....((.....((((........)-------)))..----...))........ ( -28.80)
>DroAna_CAF1 163 105 - 1
GCCCCGGAUAUCGUAGUCCUCUACGUUAUCAGAAGAUCAUGCGCGAAAUGAACUCUCGCAACGGGCUCUAGUAAGUCCACAU---AUCAU------CACAU--CUUAGUCCU---UUAU
......((((.(((((....))))).)))).((.(((.(((.((((.........))))...(((((......))))).)))---))).)------)....--.........---.... ( -23.60)
>DroPer_CAF1 28173 112 - 1
GACCCGGCUAUCGCAGUCCCCUGCGAUACAAUAAGAUGCUCAAAGAGAUGAACUCUCGCAAUGGUCUUUAGUAAGUCUAA-G---AUCUUGG---GUAUUUACUAGCUACCACGUUUAU
.....(((((((((((....)))))).......((((((((((.((((.....)))).....((((((.((.....))))-)---)))))))---))))))..)))))........... ( -31.10)
>consensus
GUCCCGGCUAUCGCAGUCCCCUGCGAUACAAAAAGAUCCUCAGAGAGAUGAACUCUCGCAACGGACUCUAGUAAGUCUAA_U___AUCUU_______ACUUA_UAUAGACCAC__UUAU
((((..((...(((((....)))))...................((((.....))))))...))))..................................................... (-15.34 = -14.95 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:21 2006