Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,234,163 – 2,234,281 |
Length | 118 |
Max. P | 0.574842 |
Location | 2,234,163 – 2,234,281 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.07 |
Mean single sequence MFE | -26.85 |
Consensus MFE | -19.70 |
Energy contribution | -19.86 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.16 |
Mean z-score | -1.64 |
Structure conservation index | 0.73 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.574842 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2234163 118 - 22407834 UACUGCUGGGAACUUACGAGUUUCUGGCCACCAAGGAUUACUGUCGGGUAAGUUAUACAUAUAUUGGAAAUACUACUAAUAAUAUUUCU--AGACACCAAAAUGUGGUGCUUUUAAAAAU ....((..((((((....))))))..))(((((........((((..(((.....)))......((((((((.((....)).)))))))--)))))........)))))........... ( -26.59) >DroSec_CAF1 16469 118 - 1 UACUGCUGGGAACUUACGAGUUCCUGGCAACCAAGGAUUACUGUCGGGUAAGUUAUACAUAUAUUCGAAAAACUACUAAUAAUAAUGCU--AGACACCAAAAUGUGGUGCUUUUAAAAAU ...(((..((((((....))))))..)))....((.((((.(((..(...((((................)))).)..))).)))).))--((.(((((.....)))))))......... ( -26.89) >DroSim_CAF1 15549 118 - 1 UACUGCUGGGAACUUACGAGUUCCUGGCCACCAAGGAUUACUGUCGGGUAAGUUAUACAUAUAUUCGAAAAACUACUAAUAAUAAUUCU--AGACACCAAAAUGUGGUGCUUUUAAAAAU ....((..((((((....))))))..)).....(((((((.(((..(...((((................)))).)..))).)))))))--((.(((((.....)))))))......... ( -26.99) >DroEre_CAF1 15689 116 - 1 UACUGCUGGGAACUUACGAGUUCCUGGCCACCAAGGAUUACUGUCGGGUAAGUU-A---UAUAUUGACAAUUCUGAAAAUAAUACUUUAAAAGACACCGAAAUGUGUUGCUUUUAAAAAU ....((..((((((....))))))..))........((((...(((((...(((-(---.....))))...)))))...))))..((((((((((((......))))..))))))))... ( -28.10) >DroYak_CAF1 15363 117 - 1 UACUGCUGGGAACUUACGAGUUCCUGGCCACCAAGGAUUACUGUCGGGUAAGUUUU---UAUAUUGAAAAUUCUGGAAAUUAAACUUCAAAAGACACUAAAAGGCGGAGGUUUUAAAAAU ....((..((((((....))))))..)).....(((((..(((((.(((..(((((---(.....))))))(((.(((.......)))...))).)))....)))))..)))))...... ( -25.70) >consensus UACUGCUGGGAACUUACGAGUUCCUGGCCACCAAGGAUUACUGUCGGGUAAGUUAUACAUAUAUUGGAAAUACUACUAAUAAUAAUUCU__AGACACCAAAAUGUGGUGCUUUUAAAAAU ....((..((((((....))))))..)).(((...(((....))).))).............................................(((((.....)))))........... (-19.70 = -19.86 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:28 2006