Locus 7809

Sequence ID 2L_DroMel_CAF1
Location 22,061,670 – 22,061,772
Length 102
Max. P 0.679795
window12514

overview

Window 4

Location 22,061,670 – 22,061,772
Length 102
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 70.98
Mean single sequence MFE -21.35
Consensus MFE -9.74
Energy contribution -9.18
Covariance contribution -0.56
Combinations/Pair 1.50
Mean z-score -2.04
Structure conservation index 0.46
SVM decision value 0.30
SVM RNA-class probability 0.679795
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 22061670 102 + 22407834
AGGAGUCACUGAGAUCAAAGAAUCUUU---AACAGAGCAACAAAACGAGCAACUUUCCGUUGUUAAUGGACUCCAUUAAAAAAUUAACUAGUUCAAAUUAAA-AA-G-------------
.((((((.(((((((......))))..---..)))............((((((.....))))))....))))))............................-..-.------------- ( -18.20)
>DroSec_CAF1 103819 106 + 1
AGGUACCGCAGAGAUCAAAGAAUCUAUCUAAACAGAACCACAAAACGGGCAAUUUUCUGCGGGUAAUGGACUCCAAUGAAAAAUCAACCAGUCCAAUUUAAAGAA-G-------------
.....(((((((((............(((....))).((.......)).....)))))))))....((((((....(((....)))...))))))..........-.------------- ( -23.40)
>DroSim_CAF1 116201 105 + 1
AGGCACCGCAGAGAUCAAAGAAUCUAUCCAAACAGAACCACAAAACGGGCAAUUUUCUGUGGGUAAUGGACUCCAAUGAAAAAUCAACCAGUCCAAUUUAAA-AA-G-------------
..((.(((((((((........(((........))).((.......)).....)))))))))))..((((((....(((....)))...)))))).......-..-.------------- ( -22.30)
>DroEre_CAF1 158421 114 + 1
AGGAAUCCUUGAGGUCAAGAACUCUAU---AACACAACAACAAAACGGAAAACUUCCUAGGGGUAAUGGAGUU--UUUAUAAAUAAUGUUGUUGAAUCUAAA-AAUGUUAUAAUUUUUAA
.(((...((((....))))...)))..---....((((((((.....(((((((.((..........))))))--)))........))))))))....((((-(((......))))))). ( -21.52)
>consensus
AGGAACCGCAGAGAUCAAAGAAUCUAU___AACAGAACAACAAAACGGGCAACUUUCUGUGGGUAAUGGACUCCAAUGAAAAAUCAACCAGUCCAAUUUAAA_AA_G_____________
.....(((((((((.......................................)))))))))....((((((....(((....)))...))))))......................... ( -9.74 =  -9.18 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:20 2006