Locus 7808

Sequence ID 2L_DroMel_CAF1
Location 22,044,576 – 22,044,674
Length 98
Max. P 0.556827
window12513

overview

Window 3

Location 22,044,576 – 22,044,674
Length 98
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 81.94
Mean single sequence MFE -33.62
Consensus MFE -25.25
Energy contribution -26.08
Covariance contribution 0.84
Combinations/Pair 1.14
Mean z-score -1.32
Structure conservation index 0.75
SVM decision value 0.05
SVM RNA-class probability 0.556827
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 22044576 98 - 22407834
GGGAAUCGUGCGACCACUGAGAUUGGAC-CGGGCAAUCAGCGGCGUCUGCAGAUGUGCUUGCCCAUGUCCACAUCCAUAUCCGUGU------CCACGUCCCUUGU
((((..((((.(((.((.((((((((((-.(((((...((((.((((....)))))))))))))..))))).)))....)).))))------))))))))).... ( -39.30)
>DroSec_CAF1 87024 104 - 1
GGGAAUCGUGCGACCACUGAGAUUGGAC-CGGGCAAUCAGCGGCGUCUGCAGAUGUGCUUGCCCAUGUCCACAUCCAUAUCCAUGUCCAUGUCCAUGUCCCUUGU
((((..((((.(((...((.((((((((-.(((((...((((.((((....)))))))))))))..))))).))))).......)))))))......)))).... ( -35.60)
>DroSim_CAF1 89128 104 - 1
GGGAAUCGUGCGACCACUGAGAUUGGAC-CGGGCAAUCAGCGGCGUCUGCAGAUGUGCUUGCCCAUGUCCACAUCCAUAUCCAUGUCCAUGUCCAUGUCCCUUGU
((((..((((.(((...((.((((((((-.(((((...((((.((((....)))))))))))))..))))).))))).......)))))))......)))).... ( -35.60)
>DroEre_CAF1 98538 79 - 1
GGGAAUCGUGCGACCACUGAGAUUGGAC-CGGGCAAUCAGCGGCGUCUGCAGAUGUGCUCGCCCAUGUCCACAUCCAAAU-------------------------
.(((.(((((....))).))...(((((-.((((....((((.((((....)))))))).))))..)))))..)))....------------------------- ( -25.30)
>DroYak_CAF1 96052 98 - 1
GGGAAUCGUGCGACCACUGAGAUUGGAC-CGGGCAAUCAGCGGCGUCUGCAGAUGUGCUUGCCCAUGUCCACUUCCAUAUCCGUGU------CUACGUCCCUUGU
((((..((((.(((.((.((((.(((((-.(((((...((((.((((....)))))))))))))..)))))..))....)).))))------))))))))).... ( -36.00)
>DroAna_CAF1 79180 88 - 1
GGGAAUGGUACUGCCACUGAGAUUGGACCCGGGCAAUCAGCGACGUCGGCAGAUGUGCAUGCCCAUGUCCACGUU-----------------CCAUGUCCUUCCU
(((((.((.((((.....(((..(((((..(((((....((.(((((....))))))).)))))..)))))..))-----------------))).))))))))) ( -29.90)
>consensus
GGGAAUCGUGCGACCACUGAGAUUGGAC_CGGGCAAUCAGCGGCGUCUGCAGAUGUGCUUGCCCAUGUCCACAUCCAUAUCC_UGU______CCAUGUCCCUUGU
((((...(((....)))...((((((((..(((((...(((.(((((....)))))))))))))..))))).)))......................)))).... (-25.25 = -26.08 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:19 2006