Locus 7806

Sequence ID	2L_DroMel_CAF1
Location	22,042,148 – 22,042,268
Length	120
Max. P	0.678834

overview

Window 9

Location	22,042,148 – 22,042,268
Length	120
Sequences	4
Columns	120
Reading direction	forward
Mean pairwise identity	87.36
Mean single sequence MFE	-31.73
Consensus MFE	-23.81
Energy contribution	-24.12
Covariance contribution	0.31
Combinations/Pair	1.13
Mean z-score	-1.65
Structure conservation index	0.75
SVM decision value	0.30
SVM RNA-class probability	0.678834
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 22042148 120 + 22407834
UGCAAGUUCUCCUUAAAGAUUUCUUUAACUUUUGCGGAAAAGCCUGCGGAGCGCUUUCAGCCAUUUGACCUAGGGAUCCCCGCAGAUGUUAAAGAAACACUAAACUUCUUUAAUGCUCUU
.(((........(((((((((((((((((.(((((((.....(((.((((..((.....))..)))).....)))....))))))).)))))))))).........)))))))))).... ( -30.00)
>DroSec_CAF1 84505 120 + 1
UGCAGGUUCUCCAUAAAGAUUUCUUUAACUUUUGCGGACAAGCCUGCGAAGCGCUUGCAGCCAUUUGACCUAGGGAUCCCCGCAGAUGUUAAAGAAACACUAAGGUUCUUUAAUGCUCUU
.(((((....)).((((((((((((((((.(((((((.(((((((....)).)))))...))..........(((...)))))))).)))))))))).((....)))))))).))).... ( -34.90)
>DroSim_CAF1 86730 120 + 1
UGCAGGUUCUCCAUAAAGAUUUCUUUAACUUUUGCGGACAAGCCUGCGAAGCGCUUGCAGCCAUUUGACCUAGGGAUCCCCGCAGAUGUUAAAGAAACACUAAGGUUCUUUAAUGCUCUU
.(((((....)).((((((((((((((((.(((((((.(((((((....)).)))))...))..........(((...)))))))).)))))))))).((....)))))))).))).... ( -34.90)
>DroEre_CAF1 95493 119 + 1
-GCAGGUCCGACUCAGAGAUUUCUUCGGCUAUUGCGGACUAAAGUGAGAAACGCUUUCAGCCAUUUGACCUAGCGAUCACCGAAGAUGUUAAAGAAAAACUAAACUUCCUUAAUGCUCUG
-............(((((...(((((((..(((((((.((((((((.....)))))).))))..(......))))))..))))))).(((((.(((.........))).))))).))))) ( -27.10)
>consensus
UGCAGGUUCUCCAUAAAGAUUUCUUUAACUUUUGCGGACAAGCCUGCGAAGCGCUUGCAGCCAUUUGACCUAGGGAUCCCCGCAGAUGUUAAAGAAACACUAAACUUCUUUAAUGCUCUU
.(((............((.((((((((((.(((((((.....(((.((((..((.....))..)))).....)))....))))))).))))))))))..))............))).... (-23.81 = -24.12 +   0.31)

alignment

secondary structure

dotplot

Window 0

Location	22,042,148 – 22,042,268
Length	120
Sequences	4
Columns	120
Reading direction	reverse
Mean pairwise identity	87.36
Mean single sequence MFE	-33.86
Consensus MFE	-24.61
Energy contribution	-25.18
Covariance contribution	0.56
Combinations/Pair	1.24
Mean z-score	-1.69
Structure conservation index	0.73
SVM decision value	0.29
SVM RNA-class probability	0.669175
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 22042148 120 - 22407834
AAGAGCAUUAAAGAAGUUUAGUGUUUCUUUAACAUCUGCGGGGAUCCCUAGGUCAAAUGGCUGAAAGCGCUCCGCAGGCUUUUCCGCAAAAGUUAAAGAAAUCUUUAAGGAGAACUUGCA
((((((((((((....))))))))(((((((((..((((((((.......((((....)))).......))))))))((......))....))))))))).))))((((.....)))).. ( -35.94)
>DroSec_CAF1 84505 120 - 1
AAGAGCAUUAAAGAACCUUAGUGUUUCUUUAACAUCUGCGGGGAUCCCUAGGUCAAAUGGCUGCAAGCGCUUCGCAGGCUUGUCCGCAAAAGUUAAAGAAAUCUUUAUGGAGAACCUGCA
..((((.((((((((.(.....).))))))))....((((((....))).((((....)))))))...)))).(((((.((.((((.......(((((....))))))))).))))))). ( -33.91)
>DroSim_CAF1 86730 120 - 1
AAGAGCAUUAAAGAACCUUAGUGUUUCUUUAACAUCUGCGGGGAUCCCUAGGUCAAAUGGCUGCAAGCGCUUCGCAGGCUUGUCCGCAAAAGUUAAAGAAAUCUUUAUGGAGAACCUGCA
..((((.((((((((.(.....).))))))))....((((((....))).((((....)))))))...)))).(((((.((.((((.......(((((....))))))))).))))))). ( -33.91)
>DroEre_CAF1 95493 119 - 1
CAGAGCAUUAAGGAAGUUUAGUUUUUCUUUAACAUCUUCGGUGAUCGCUAGGUCAAAUGGCUGAAAGCGUUUCUCACUUUAGUCCGCAAUAGCCGAAGAAAUCUCUGAGUCGGACCUGC-
(((((..(((((((((.......)))))))))..((((((((((((....))))....(((((((.(.(.....).)))))))).......))))))))...)))))............- ( -31.70)
>consensus
AAGAGCAUUAAAGAACCUUAGUGUUUCUUUAACAUCUGCGGGGAUCCCUAGGUCAAAUGGCUGAAAGCGCUUCGCAGGCUUGUCCGCAAAAGUUAAAGAAAUCUUUAAGGAGAACCUGCA
..((((.((((((((((.....))))))))))....((((((....))).((((....)))))))...)))).(((((.((.(((((....))(((((....))))).))).))))))). (-24.61 = -25.18 +   0.56)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:16 2006