| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 22,032,847 – 22,032,965 |
| Length | 118 |
| Max. P | 0.739946 |
| Location | 22,032,847 – 22,032,965 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 83.09 |
| Mean single sequence MFE | -16.55 |
| Consensus MFE | -9.87 |
| Energy contribution | -9.77 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.61 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.739946 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 22032847 118 - 22407834 UUAAGGAGAAACAAACAAAACACUCAAAUAGCAAAACGAUAGCAAAAAUUUUGCAAAAACCAGAGCACCUAAAAACGAAAUUGAAAGAUUUUGCCCAAAUCAAAAUCUUUAUCCAAUA ....(((.......................((((((............)))))).............................((((((((((.......)))))))))).))).... ( -14.50) >DroSec_CAF1 75365 102 - 1 UUGAGCAGAAACAAACGGAACACUC-----------CGAUAGCAAAAAUUUUUCGAAAACCAGAGCACCUAUAAACAAAAUCGAAAGAUUUUGCCCAAAUCUAAAUCUUU-----AUA ..((..(((......((((....))-----------))...((((((.((((((((........................)))))))))))))).....)))...))...-----... ( -16.36) >DroSim_CAF1 76806 107 - 1 UUCAGCAGAAACAAACGGAUCACUC-----------CGAUAGCAAAAAUUUUGCGAAAACCAGAGCACCUAUAAACAAAAUCGAAAGAUUUUGCCCAAAUCUAAAUCUUAAUUCAAUA ....((.........((((....))-----------))...((((.....))))..........)).........(((((((....)))))))......................... ( -18.80) >consensus UUAAGCAGAAACAAACGGAACACUC___________CGAUAGCAAAAAUUUUGCGAAAACCAGAGCACCUAUAAACAAAAUCGAAAGAUUUUGCCCAAAUCUAAAUCUUUAU_CAAUA .....................................(((.((((.....)))).....................(((((((....))))))).....)))................. ( -9.87 = -9.77 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:14 2006