| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 22,031,290 – 22,031,410 |
| Length | 120 |
| Max. P | 0.827070 |
| Location | 22,031,290 – 22,031,410 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 86.31 |
| Mean single sequence MFE | -21.52 |
| Consensus MFE | -15.51 |
| Energy contribution | -15.33 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.827070 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 22031290 120 + 22407834 GCACUUAAACAACCAUGUAUAAGAAUGGUUUAAUCUUCUUUCCCAAAAAUCUUCUCACCUUCAAGAGCUGUACUCAUUAGCUCGGCCAAGCAAUUUAGCAAUAAACUAUUAAAAAUUAUC ...((((.(((....))).))))(((((((((................................((((((.......))))))......((......))..))))))))).......... ( -19.70) >DroSec_CAF1 73659 118 + 1 GAACUUGAA-AACCAUGUAUAAGAAUGGUUUGAUCUUCCUUCCGAGAAAUCUUCUCACCUUCAAGAGCUGUUCUAAUUAGCUCUGCCAAGCAAUUUAGCAACAAAUUAUUCA-AAUUAUC .........-............((((((((((...........((((.....)))).......(((((((.......))))))).....((......))..)))))))))).-....... ( -23.50) >DroSim_CAF1 75188 118 + 1 GAACUUGAA-AACCAUGUAUAAGAAUGGCUUAAUCUUCCUUCCGAGAAAUCUUCUCACCUUCAAGAGCUGUUCUAAUUAGCUCUGCCAAGCAAUUUAGCAAUAAGUUAUUCA-AAUUAUC ....(((((-............(..((((..............((((.....)))).......(((((((.......)))))))))))..)((((((....)))))).))))-)...... ( -24.30) >DroEre_CAF1 84054 118 + 1 GUAGUUAACAAACCAUGUAUAAAAAUGGUUUAAUUUUCUUUCCCAGAAAACGUCUUACCUUCUAGAGUUGUUCUUAUUAGCUCGGCCAAGCAAUUCAUCAAUAAACUAUGCA-AAUU-UC ((((((...(((((((........)))))))......(((..((((((...........)))).((((((.......))))))))..))).............))))))...-....-.. ( -18.60) >consensus GAACUUAAA_AACCAUGUAUAAGAAUGGUUUAAUCUUCCUUCCCAGAAAUCUUCUCACCUUCAAGAGCUGUUCUAAUUAGCUCGGCCAAGCAAUUUAGCAAUAAACUAUUCA_AAUUAUC ......................((((((((((................................((((((.......))))))......((......))..))))))))))......... (-15.51 = -15.33 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:13 2006