| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 22,030,917 – 22,031,023 |
| Length | 106 |
| Max. P | 0.516178 |
| Location | 22,030,917 – 22,031,023 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 87.94 |
| Mean single sequence MFE | -23.87 |
| Consensus MFE | -21.71 |
| Energy contribution | -22.27 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.91 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.516178 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 22030917 106 + 22407834 UUUUUUUUUAAUAUAUCCGCACCCGAACAAAGGGACCUCGCAUUUUCAUUGGCUGCACAAUAUUCCAUCCAGUAAUUUGUAAUGUCUUGCGAAGCCUCUGUUGGCU .................(((((((.......))).....(((..((.(((((.((..........)).)))))))..))).......)))).((((......)))) ( -20.10) >DroSec_CAF1 73323 103 + 1 UUU---UUUAAUAUAUAUGCACCAAAACAAAGGGAUCUUGCUUUUUCAUUGGGCGCACUGCAUUGCAUCCAGUGUUUUGUAAUGUCUUGCGAAGCCUCUGAUGGCU ...---...........((((((........))(((.((((.....((((((..(((......)))..))))))....)))).))).)))).((((......)))) ( -25.90) >DroSim_CAF1 74852 103 + 1 UUU---UUUAAUAUAUCCGCACCAAAACAAAGGGAUCUUGCUUUUUCAUUGGCCGCACAGCAUUGCAUCCAGUGUUUUGUAAUGUCUUGCGAAGCCUCUGAUGGCU ...---...........((((((........))(((.((((.....((((((..(((......)))..))))))....)))).))).)))).((((......)))) ( -25.60) >consensus UUU___UUUAAUAUAUCCGCACCAAAACAAAGGGAUCUUGCUUUUUCAUUGGCCGCACAGCAUUGCAUCCAGUGUUUUGUAAUGUCUUGCGAAGCCUCUGAUGGCU .................((((((........))(((.((((.....((((((..(((......)))..))))))....)))).))).)))).((((......)))) (-21.71 = -22.27 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:12 2006