| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 22,017,004 – 22,017,103 |
| Length | 99 |
| Max. P | 0.681918 |
| Location | 22,017,004 – 22,017,103 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 71.67 |
| Mean single sequence MFE | -26.10 |
| Consensus MFE | -14.68 |
| Energy contribution | -15.93 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.681918 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 22017004 99 - 22407834 UAAAUAAAUUGAAAGUACGCUGUGCUGGGAUUGCUAUUCU-GAAUGCUA----UAUCUGCUCGACGGGCAUAUGGACAGGCACAGACCUACAUACUUGUAGGUA ...................((((((((((((....)))))-...(((((----((..((((.....))))))))).)))))))))(((((((....))))))). ( -29.80) >DroSec_CAF1 60047 95 - 1 UA--------GAAAGUGUGCUGUGCAGGGAUUACUAUCCU-GAAUGAUAUAUAUAUCCGCUCGACAGGCACAUGGACAGGCACCGACCUACAUACUUGUAGGUA ..--------....((((.((((.((.((((...((((..-....)))).....))))(((.....)))...)).))))))))..(((((((....))))))). ( -27.10) >DroSim_CAF1 61170 95 - 1 UA--------GAAAGUGCGCUGUGCAGGGAUUACUAUCCU-GAAUGAUAUAUAUAUCCGCUCGACAGGCACAUGGACAGGCACCGACCUACAUACUUGUAGGUA ..--------....((((.((((.((.((((...((((..-....)))).....))))(((.....)))...)).))))))))..(((((((....))))))). ( -29.80) >DroEre_CAF1 68404 77 - 1 ----------CAUAGUG---UGACCAGGGUUUACAAUUUUCGAAUGC------UAUCCGAUCGACGGUCAUACGGAUAGGCAU--------GUACUUGUUGACA ----------....(((---(((((.(......).....((((.((.------....)).)))).)))))))).((((((...--------...)))))).... ( -17.70) >consensus UA________GAAAGUGCGCUGUGCAGGGAUUACUAUCCU_GAAUGAUA____UAUCCGCUCGACAGGCACAUGGACAGGCACCGACCUACAUACUUGUAGGUA ..............((((.((((.(.(((((....)))))..................(((.....)))....).))))))))..(((((((....))))))). (-14.68 = -15.93 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:10 2006