Locus 7800

Sequence ID 2L_DroMel_CAF1
Location 22,014,944 – 22,015,045
Length 101
Max. P 0.773620
window12503

overview

Window 3

Location 22,014,944 – 22,015,045
Length 101
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 85.62
Mean single sequence MFE -32.65
Consensus MFE -23.10
Energy contribution -24.98
Covariance contribution 1.87
Combinations/Pair 1.14
Mean z-score -1.90
Structure conservation index 0.71
SVM decision value 0.54
SVM RNA-class probability 0.773620
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 22014944 101 + 22407834
CCAACAAAACUGCCGACAUUGAAACUGUCGCUAUGUCUAAGUGGGCGGCUAAAGUGGGUGGCGUAUUAAGAGGCAGGCGCGGGAACGCCAAGGUGAGUGGC
(((.....((((((((((.......))))(((...(((.((((.((.(((......))).)).)))).)))))).)))(((....)))...)))...))). ( -31.80)
>DroSec_CAF1 58012 100 + 1
CCAACAAAACUGCCGACAUUGAAACUGUCUCUAUGUCUAAGUGGGCGGCUAAAGUGGGUGGCGCAUUUAGAGGCAGGUGCA-AAAUGCCAAGGUGAGUGGC
.........(((((((((.......))))......((((((((.((.(((......))).)).))))))))))))).....-....((((.......)))) ( -33.00)
>DroSim_CAF1 59115 101 + 1
CCAACAAAACUGCCGACAUUGAAACUGUCUCUAUGUCUAAGUGGGCGGCUAAAGUGGGUGGCGCAUUUAGAGGCAGGUGCGGGAAUGCCAAGGUGAGUGGC
((..((...(((((((((.......))))......((((((((.((.(((......))).)).))))))))))))).))..))...((((.......)))) ( -37.20)
>DroYak_CAF1 52017 89 + 1
CCAACAAAACUGCCGACAUUGGAACUGUCUCUAUGUCUAAGUGG-AGGCUAAUGUGGGUAGAGCAUUACAAAGUAGGUGCG-----------AUGAGUGGC
(((......(((((.((((((.....((((((((......))))-)))))))))).))))).(((((........))))).-----------.....))). ( -28.60)
>consensus
CCAACAAAACUGCCGACAUUGAAACUGUCUCUAUGUCUAAGUGGGCGGCUAAAGUGGGUGGCGCAUUAAGAGGCAGGUGCG_GAAUGCCAAGGUGAGUGGC
(((......(((((((((.......))))......((((((((.((.(((......))).)).)))))))))))))..(((....))).........))). (-23.10 = -24.98 +   1.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:10 2006