| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 22,011,695 – 22,011,812 |
| Length | 117 |
| Max. P | 0.804506 |
| Location | 22,011,695 – 22,011,812 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 68.93 |
| Mean single sequence MFE | -18.76 |
| Consensus MFE | -4.30 |
| Energy contribution | -4.82 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.23 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.804506 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 22011695 117 + 22407834 CAUUUAAAUUGUUCAUUUUACGAAGCCGACUGUUUAACGGUCGUAUGAAAUCAUUCAAUCAAAAGCCCAACAUACUUUAAACUGAAUAACC-AUCCUAGUUGAUGGUUUAAAUUAAAA .((((((((((((((.((((......((((((.....))))))..((((....))))....................)))).)))))))((-(((......))))))))))))..... ( -21.40) >DroSec_CAF1 54618 98 + 1 CAUUUAAAUUGUUUGCUUUACGAAGCCA-------------------AAAUCUUUCAAACAGCAGCCCAAAAUACAUUAAACUGAAUAACC-AUCCUAGUUGAUGGUUCAAAUUAAAA ..(((((.(((.(((((....((((...-------------------.....))))....)))))......................((((-(((......)))))))))).))))). ( -13.10) >DroSim_CAF1 55856 98 + 1 CAUUUAAAUUGUUUGCUUUACGAAGCCA-------------------AAAUCUUUCAAUCAACAGCCCAAAAUACAUUAAACUGAAUAACC-AUCCUAGUUAUUGGGUCAAACUAAAA ..........(((((......((((...-------------------.....))))........((((......((......))((((((.-......)))))))))))))))..... ( -10.50) >DroEre_CAF1 62014 108 + 1 AAUUUAAAUUGUUUGCUUAACGAAGCAGGCUGUCUAACAGUCAUAUAAA--------AUCAAAAGC-CAAAAUAAUUUAAGCUGAAUAACUUAAACCAAUU-AUGGUUUAAGUUCCUA ..((((((((((((((((....)))).(((((.....))))).......--------.........-..))))))))))))......(((((((((((...-.))))))))))).... ( -27.80) >DroYak_CAF1 46828 109 + 1 AAUUUGAAUUGUUUGCUUUACGAAGCUGGCUGUGUAACGGUCAUAUAAA--------AUCAAAAGUUCAAACUACUUUAAACUGAAUAACGUACACCAAGU-AUGGUUUUUAUUCAUA ..((((((((....((((....))))((((((.....))))))......--------......))))))))...........((((((((((((.....))-)))....))))))).. ( -21.00) >consensus CAUUUAAAUUGUUUGCUUUACGAAGCCG_CUGU_UAAC_GUC_UAU_AAAUC_UUCAAUCAAAAGCCCAAAAUACUUUAAACUGAAUAACC_AUCCUAGUU_AUGGUUUAAAUUAAAA ........((((((((((....)))).(((((.....))))).........................................)))))).....((((.....))))........... ( -4.30 = -4.82 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:09 2006