| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 22,008,869 – 22,008,980 |
| Length | 111 |
| Max. P | 0.960015 |
| Location | 22,008,869 – 22,008,980 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 76.67 |
| Mean single sequence MFE | -50.03 |
| Consensus MFE | -31.58 |
| Energy contribution | -32.17 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.63 |
| SVM decision value | 1.51 |
| SVM RNA-class probability | 0.960015 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 22008869 111 - 22407834 UUCACUGGGUGCUAACUUAGAAUAUCCCAGUCCGCCCGUCUUUGCCGCUACAGCUGCCAAGUAUGGGUUGAUGGGGGGCAUCCAGCUGCCAGGUGGAAGAGGUGACUUGUA ..(((((((((((...........(((((.((.(((((((((.((.((....)).)).))).)))))).)))))))))))))))).))((....))..(((....)))... ( -41.20) >DroVir_CAF1 40696 105 - 1 CUCGCUGGGCGCCAUUUUGC---CGCUCAGC---CCGGACUUGGCCGCCACGGCAGCCAGGUAGGGAUUGAUGGGUGGCACCCAGCUGCCUGGCGGCAGCGGGGAUUUGUA (((((((((.(((((....(---((.(((((---((..(((((((.((....)).))))))).))).)))))))))))).))).(((((...)))))))))))........ ( -55.50) >DroEre_CAF1 59087 111 - 1 CUCACUGGGUGCCAACUUGGAAUAUCCCAAUCCCCCCGUCUUGGCGGCCACAGCCGCCAGGUAUGGGUUGAUGGACGGCAUCCAGCCGCCAGGUGGUAGAGGUGACUUGUA .(((((...(((((.(((((......(((.((..((((((((((((((....))))))))).)))))..))))).((((.....))))))))))))))..)))))...... ( -53.10) >DroYak_CAF1 43956 111 - 1 CUCACUGGGUGCCAACUUAGAGUAUCCCAAGCCGCAAGUCUUAGCCGCUACAGCCGCCAAGUAUGGGUUCAUGGGCGGCAUCCAGCUGCCAGGUGGUAGAGGGGACUUGUA .....((((((((......).))).))))....(((((((...((((((.((...(((.......)))...))))))))..((..(((((....)))))..))))))))). ( -41.70) >DroMoj_CAF1 54807 105 - 1 CUCGCUGGGCGCCAUCUUGC---CGCCCAGC---CCCGACUUGGCCGCCACAGCAGCCAGGUAGGGAUUUAUGGGCGGCACCCAGCUGCCCGGGGGCAAGGGAGAUUUGUA (((((((((........(((---((((((..---(((.(((((((.((....)).))))))).))).....)))))))))))))))((((....))))...)))....... ( -57.30) >DroAna_CAF1 50499 111 - 1 UUCACUUGGCCCCAGUUUCGGGUUGCCCAGACCUCCGGUUUUGGCCGCCACCGCUGCCAGGUAGGGGUUGAUGGGCGGCACCCAGCUGCCGGGGGGCAGGGGGGACUUGUA ...((..(.((((......((((((((((((((.((...((((((.((....)).))))))..))))))..))))))..))))..(((((....))))).)))).)..)). ( -51.40) >consensus CUCACUGGGCGCCAACUUGGA_UAGCCCAGCCC_CCCGUCUUGGCCGCCACAGCAGCCAGGUAGGGGUUGAUGGGCGGCACCCAGCUGCCAGGUGGCAGAGGGGACUUGUA (((.(((((.(((...........(((((.....((...((((((.((....)).))))))...)).....)))))))).)))))(((((....)))))..)))....... (-31.58 = -32.17 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:06 2006