Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 22,004,059 – 22,004,209 |
Length | 150 |
Max. P | 0.665085 |
Location | 22,004,059 – 22,004,169 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 90.36 |
Mean single sequence MFE | -33.54 |
Consensus MFE | -26.80 |
Energy contribution | -27.00 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.15 |
Mean z-score | -1.51 |
Structure conservation index | 0.80 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.665085 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 22004059 110 - 22407834 UUCUACUGGCCUCAACCAGUACUUGCCUGGCAAGCUACCCUUGAGGAGAGCUAUGCGAUCUAGGGUUUCCUGGCUGGGCGGUUUUUUUCCUCUGGCUCUCUCCUCCAUAA ...((((((......))))))(((((...)))))........((((((((..........((((....))))((..((.((.......))))..)).))))))))..... ( -33.90) >DroSec_CAF1 47286 110 - 1 UUCUACUGGCCUUAACCAGUACUUGCCUGGCAAGCUACCCUUGAGGAGAGCUAUGCGAUCUAGGGUUUCCUGGCUGGGCGGUUUUUUUCCUCUGGCUCUCUCCUCCAUAA ...((((((......))))))(((((...)))))........((((((((..........((((....))))((..((.((.......))))..)).))))))))..... ( -33.90) >DroSim_CAF1 48476 110 - 1 UUCCACUGGCCUUAACCAGUACUUGCCUGGCAAGCUACCCUUGAGGAGAGCUAUGCGAUCUAGGGUUUCCUGGCUGGGCGGUUUUUUUCCUCUGGCUCUCUCCUCCAUAA ....(((((......))))).(((((...)))))........((((((((..........((((....))))((..((.((.......))))..)).))))))))..... ( -33.00) >DroEre_CAF1 53604 110 - 1 UUCCACUGGCUUCAGCCAAUACUUGCUUGGCAAGCUACCCUUGAGGAGAGCUAUGCGUUCUUGGGUUUCCUGGUUGGGCGGUGGUUUUCCUCUGGCUCUCUCCUGCAUGA ......((((....))))...(.(((..((..(((((.....((((((((((((.((((((..((...))..)..))))))))))))))))))))))....)).))).). ( -35.90) >DroYak_CAF1 38296 110 - 1 UUCCACUGGCUUCAGCCAAUACUUGCUCGGCAAGCUACCCCUGAGGAAUACUAUCCGAUCUUGGGUUUCCUGGCUGGGCGGUUUCUUUCCUUUGGCUCUUUCUUCCAUAA ......(((....((((((.....(((((((.((..((((..(((((......)))..))..))))...)).)))))))((.......)).)))))).......)))... ( -31.00) >consensus UUCCACUGGCCUCAACCAGUACUUGCCUGGCAAGCUACCCUUGAGGAGAGCUAUGCGAUCUAGGGUUUCCUGGCUGGGCGGUUUUUUUCCUCUGGCUCUCUCCUCCAUAA ....(((((......))))).(((((...)))))........((((((((............((....)).(((..((.((.......))))..)))))))))))..... (-26.80 = -27.00 + 0.20)
Location | 22,004,089 – 22,004,209 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.33 |
Mean single sequence MFE | -41.04 |
Consensus MFE | -34.32 |
Energy contribution | -34.12 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.18 |
Mean z-score | -1.29 |
Structure conservation index | 0.84 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.547720 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 22004089 120 + 22407834 CGCCCAGCCAGGAAACCCUAGAUCGCAUAGCUCUCCUCAAGGGUAGCUUGCCAGGCAAGUACUGGUUGAGGCCAGUAGAAGGCUAUCCAGAAACAUUGGCUGAGUUGGAGGCGAGCAGUC .((((....((((....(((.......)))...))))...)))).(((((((.(((...(((((((....)))))))....))).(((((...((.....))..)))))))))))).... ( -39.40) >DroSec_CAF1 47316 120 + 1 CGCCCAGCCAGGAAACCCUAGAUCGCAUAGCUCUCCUCAAGGGUAGCUUGCCAGGCAAGUACUGGUUAAGGCCAGUAGAAGGCUAUCCAGAAACUUUGGCUGAGUUGGAGGCAAGCAGUC .((((....((((....(((.......)))...))))...)))).(((((((.(((...(((((((....)))))))....))).((((...((((.....))))))))))))))).... ( -40.80) >DroSim_CAF1 48506 120 + 1 CGCCCAGCCAGGAAACCCUAGAUCGCAUAGCUCUCCUCAAGGGUAGCUUGCCAGGCAAGUACUGGUUAAGGCCAGUGGAAGGCUAUCCAGAAACUUUGGCUGAGUUGGAGGCAAGCAGUC .((((....((((....(((.......)))...))))...)))).(((((((.(((...(((((((....)))))))....))).((((...((((.....))))))))))))))).... ( -40.50) >DroEre_CAF1 53634 120 + 1 CGCCCAACCAGGAAACCCAAGAACGCAUAGCUCUCCUCAAGGGUAGCUUGCCAAGCAAGUAUUGGCUGAAGCCAGUGGAAGACUAUCCAGAAACCUUGGCUGACUUGGAGGCCAGCAGUC .(((......(....)(((((.......((((..((....))..)))).((((((.....((((((....))))))(((......)))......))))))...))))).)))........ ( -37.20) >DroYak_CAF1 38326 120 + 1 CGCCCAGCCAGGAAACCCAAGAUCGGAUAGUAUUCCUCAGGGGUAGCUUGCCGAGCAAGUAUUGGCUGAAGCCAGUGGAAGACUAUCCAGAAACCCUGGCUGAGUUGGAGGCCAGCAGUC ....((((((((...(....)...(((((((.((((.........((((((...))))))((((((....)))))))))).)))))))......)))))))).(((((...))))).... ( -47.30) >consensus CGCCCAGCCAGGAAACCCUAGAUCGCAUAGCUCUCCUCAAGGGUAGCUUGCCAGGCAAGUACUGGUUGAGGCCAGUGGAAGGCUAUCCAGAAACCUUGGCUGAGUUGGAGGCAAGCAGUC .((((....((((....(((.......)))...))))...)))).(((((((.......(((((((....)))))))...((((..((((.....))))...))))...))))))).... (-34.32 = -34.12 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:03 2006