Locus 7794

Sequence ID 2L_DroMel_CAF1
Location 21,999,851 – 21,999,943
Length 92
Max. P 0.551276
window12494

overview

Window 4

Location 21,999,851 – 21,999,943
Length 92
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 90.46
Mean single sequence MFE -21.55
Consensus MFE -16.87
Energy contribution -16.76
Covariance contribution -0.11
Combinations/Pair 1.09
Mean z-score -2.45
Structure conservation index 0.78
SVM decision value 0.04
SVM RNA-class probability 0.551276
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21999851 92 - 22407834
ACACACACUGUCACAAACAGUACGUCAGCG-------CACACAUACAUA--------CGUCCGCAUGCAGUCAUAGACAUGUCAACAUGUUGAUGAUGGUAACUAAC
......(((((.....)))))......(((-------.((.........--------.)).))).(((.(((((.((((((....)))))).))))).)))...... ( -20.90)
>DroSec_CAF1 43734 88 - 1
ACACACACUGUCACAAACAGUACGUCAGCG-------CACACA----UA--------CGUCCGCAUGCAGUCAUAGACAUGUCAACAUGUUGAUGAUGGUAACUAAC
......(((((.....)))))......(((-------.((...----..--------.)).))).(((.(((((.((((((....)))))).))))).)))...... ( -22.00)
>DroSim_CAF1 44835 88 - 1
ACACACACUGUCACAAACAGUACGUCAGCG-------CACACA----UA--------CGUCCGCAUGCAGUCAUAGACAUGUCAACAUGUUGAUGAUGGUAACUAAC
......(((((.....)))))......(((-------.((...----..--------.)).))).(((.(((((.((((((....)))))).))))).)))...... ( -22.00)
>DroEre_CAF1 48684 96 - 1
ACACACACUGUCACAAACAGCACAUCAGCG-------CACACA----UACAUCCGUACGUCCGCAUGCAGUCAUAGACAUGUCAACAUGUUGAUGAUGGUAACUAAC
.......((((.....)))).......(((-------.((...----(((....))).)).))).(((.(((((.((((((....)))))).))))).)))...... ( -20.10)
>DroYak_CAF1 33731 88 - 1
ACACACACUGUCACAAACAGUACGUCAGCG-------CACACA----UA--------CGUCCGCAUGCAGUCAUAGACAUGUCAACAUGUUGAUGAUGGUAACUAAC
......(((((.....)))))......(((-------.((...----..--------.)).))).(((.(((((.((((((....)))))).))))).)))...... ( -22.00)
>DroAna_CAF1 41855 95 - 1
ACACACACUGUCACAAACAGUAUGUCAGCGUCACAGACACACA----CA--------CAUAUGCAUGCAGUCAUAGACAUGUCAACAUGUUGAUGAUGGCAACUAAC
..(((.(((((.....))))).)))..(.(((...))).)...----..--------........(((.(((((.((((((....)))))).))))).)))...... ( -22.30)
>consensus
ACACACACUGUCACAAACAGUACGUCAGCG_______CACACA____UA________CGUCCGCAUGCAGUCAUAGACAUGUCAACAUGUUGAUGAUGGUAACUAAC
......(((((.....)))))......(((...............................))).(((.(((((.((((((....)))))).))))).)))...... (-16.87 = -16.76 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:01 2006