Locus 7793

Sequence ID 2L_DroMel_CAF1
Location 21,999,288 – 21,999,390
Length 102
Max. P 0.871056
window12493

overview

Window 3

Location 21,999,288 – 21,999,390
Length 102
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 75.69
Mean single sequence MFE -25.22
Consensus MFE -17.91
Energy contribution -17.97
Covariance contribution 0.06
Combinations/Pair 1.36
Mean z-score -1.33
Structure conservation index 0.71
SVM decision value 0.87
SVM RNA-class probability 0.871056
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21999288 102 - 22407834
GAACUUUUGGCCAGGCCUCAGGACACAGUUACCAUCGAAUGUUUUGUGCAACAUACUGCGGCAAUCACAUGUGAUGAACUGCAAAAUGUCACAGGACAAUGA
...(((..(((...)))..))).................(((((((((..((((..(((((..((((....))))...)))))..))))))))))))).... ( -25.90)
>DroSec_CAF1 43162 102 - 1
CAACUUUUGGACAGGUCUCAGGACACAGUUUCCAUGGAAUGUUUUGUGCAACAUGCUGCGGCAAUCACAUGUGAUGAACUGCAAAAUGUCACAGGACAAUUA
...((..((((...(((....)))......)))).))..(((((((((..((((..(((((..((((....))))...)))))..))))))))))))).... ( -28.90)
>DroSim_CAF1 44263 102 - 1
CAACUUUUGGACAGGUCUCGGGACACAGUUUCCAUGGAAUGUUUUGUGCAACAUGCUGCGGCAAUCACAUGUGAUGAACUGCAAAAUGUCACAGGACAAUGA
...((..((((...(((....)))......)))).))..(((((((((..((((..(((((..((((....))))...)))))..))))))))))))).... ( -28.90)
>DroEre_CAF1 48131 98 - 1
GAACUUUCGGA----ACUCAGGAUACAGUGUCCACCGAAUGCUUUCUACAACAUACUGCGGCAAUCACAUGUGAUGAACUGCAAAAUGUCACAGGACUGCGA
.....(((((.----.....((((.....)))).)))))(((..(((...((((..(((((..((((....))))...)))))..))))....)))..))). ( -22.90)
>DroYak_CAF1 33241 97 - 1
GAGCCUUUGGA----ACUCAGGAUACAGUGUCCAUUGAAUGUUUUCUGCAACAUACAA-AACAAUCACAAGUGAUGAACUGCAAAAUGUCAGGAGGCAAUGG
..(((((..((----.....((((.....)))).(((.(((((......))))).)))-....((((....)))).............))..)))))..... ( -19.30)
>DroAna_CAF1 41459 82 - 1
---------AA----CCACUGUACC------CUGUGCCCUGUUUUGUGCAACAUACUGCGGCAAUCACAUGUGAUGAACUGCAAAGUGUCACAAAGCGGCA-
---------..----..........------...((((..((((((((..((((..(((((..((((....))))...)))))..))))))))))))))))- ( -25.40)
>consensus
GAACUUUUGGA____ACUCAGGACACAGUUUCCAUGGAAUGUUUUGUGCAACAUACUGCGGCAAUCACAUGUGAUGAACUGCAAAAUGUCACAGGACAAUGA
.......................................(((((((((..((((..(((((..((((....))))...)))))..))))))))))))).... (-17.91 = -17.97 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:00 2006