Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,964,000 – 21,964,115 |
Length | 115 |
Max. P | 0.706904 |
Location | 21,964,000 – 21,964,115 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.94 |
Mean single sequence MFE | -25.54 |
Consensus MFE | -19.97 |
Energy contribution | -20.25 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.04 |
Mean z-score | -1.42 |
Structure conservation index | 0.78 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.706904 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21964000 115 + 22407834 CGGUUAUUUAUUUUUGCUUCAGUGCGAAGUGUCACCGACUUCGCAGCGCUUCCAUCAAUCAAUCGCUUCGAAUUAUAAAUAACCAAA-ACC-UC--C-UCGGGGCUGCCGUCCGAUUACA .((((((((((.((((......((((((((.......))))))))(((...............)))..))))..))))))))))...-...-..--.-...((((....))))....... ( -28.16) >DroVir_CAF1 4560 100 + 1 CGGCUAUUUAUUUUUGC-GCACUGCCAAGUGUCACCGACUUUGCGGCGAUUCCAUCAAUCAAUCGCGUCGAAUUAUAAAUAACCAAC-GAU-----A-UUGCGACUG-C----------- .((.(((((((.(((((-((.((((.((((.......)))).)))).((((.....))))....))).))))..))))))).))...-...-----.-.........-.----------- ( -22.10) >DroPse_CAF1 34075 114 + 1 CGGUUAUUUAUUUUUGCCUCAGUGCCAAGUGUCACCGACUUUGCAGCGAUUCCAUCAAUCAAUCGCUUCGAAUUAUAAAUAACCAAAAACC-UC--CAUCGGGG---CCGACCGAUUGCC .((((((((((.((((......(((.((((.......)))).)))((((((.........))))))..))))..)))))))))).......-..--.(((((..---....))))).... ( -28.10) >DroMoj_CAF1 17115 105 + 1 CGGCUAUUUAUUUUUGC-GCACUGCCAAGUGUCACCGACUUUGCGGCGAUUCCAUCAAUCAAUCGCAUCGAAUUAUAAAUAACCAAC-GACGUGACG-UUCCAACUC-C----------- .((.(((((((..((..-(((((....)))))...(((...(((((.((((.....))))..))))))))))..))))))).))(((-(......))-)).......-.----------- ( -19.80) >DroAna_CAF1 20126 115 + 1 CGGUUAUUUAUUUUUGCCUCAGUGCCAAGUGUCACCGACUUUGCAGCGAUUCCAUCAAUCAAUCGCUCCGAAUUAUAAAUAACCAAA-ACC-AC--C-UCGGGGCCGCCAUCCGAUUGCC .((((((((((.((((......(((.((((.......)))).)))((((((.........))))))..))))..))))))))))...-...-..--.-(((((.......)))))..... ( -27.00) >DroPer_CAF1 33926 114 + 1 CGGUUAUUUAUUUUUGCCUCAGUGCCAAGUGUCACCGACUUUGCAGCGAUUCCAUCAAUCAAUCGCUUCGAAUUAUAAAUAACCAAAAACC-UC--CAUCGGGG---CCGACCGAUUGCC .((((((((((.((((......(((.((((.......)))).)))((((((.........))))))..))))..)))))))))).......-..--.(((((..---....))))).... ( -28.10) >consensus CGGUUAUUUAUUUUUGCCUCAGUGCCAAGUGUCACCGACUUUGCAGCGAUUCCAUCAAUCAAUCGCUUCGAAUUAUAAAUAACCAAA_ACC_UC__C_UCGGGGCUGCCG_CCGAUUGCC .((((((((((.((((......(((.((((.......)))).)))((((((.........))))))..))))..)))))))))).................................... (-19.97 = -20.25 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:59 2006