| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,960,981 – 21,961,094 |
| Length | 113 |
| Max. P | 0.692023 |
| Location | 21,960,981 – 21,961,094 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.37 |
| Mean single sequence MFE | -37.10 |
| Consensus MFE | -22.08 |
| Energy contribution | -22.17 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.692023 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21960981 113 - 22407834 GAG-----GACACACUCGCACGCAGGCAUU-GGAGGCAGUUAUGGCUGUCAAGAUGAAUGCCAUAUCAUCGCUGCACCGAAAAUGGUGUCAAAACGUCACCAACGGCGGUUCAACACUU- (((-----......)))....((((.(...-...((((((....))))))..(((((........))))))))))((((....(((((.(.....).)))))....)))).........- ( -34.20) >DroPse_CAF1 28900 116 - 1 GUGUGGCAGUGGCAGUGGCAGGCAGCCAUC-AGAGGCAGUUAUGCUUGUCAAGAUGAAUGCCAUAUCAUCGCCGCACCGAAAAUGGUGUCAAAACGUCACCAACGGCGGUUCC---CUUC ....((..(((((..((((((((((((...-...))).....))))))))).(((((........))))))))))((((....(((((.(.....).)))))....))))..)---)... ( -42.50) >DroYak_CAF1 87 113 - 1 GAG-----GAGAAACUCUCACGCAGGCAAU-GGAGGCAGUUAUGGCUGUCGAGAUGAAUGCCAUAUCAUCGCAGCACCGAAAAUGGUGUCAAAACGUCACCCACGGCGGUUCAACACUU- (((-----(......))))..((..((...-...((((((....))))))..(((((........))))))).))((((.....((((.(.....).)))).....)))).........- ( -30.20) >DroMoj_CAF1 12724 91 - 1 -------------AGCCGGA-GCAGGCAUCAGGCGGCAGUUAUGGCUGUCAAGAUGAAUGCCAUAUCAUCG---CACCGAAAAUGGUGUCAAAAUGUCAGCAGCGCUA------------ -------------.(((...-...)))....((((.((....))((((.((.(((((........)))))(---((((......))))).....)).))))..)))).------------ ( -28.20) >DroAna_CAF1 16443 106 - 1 G------------GCAGGCAGGCAGGCAUC-GGAGGCAGUUAUGGCUGUCAAGAUGAAUGCCAUAUCAUCGCCGCACCGAAAACGGUGUCAAAACGUCACCAACGGCGGUUCAGCCCUU- .------------...(((.((((..((((-...((((((....))))))..))))..)))).....((((((((((((....))))))......((.....))))))))...)))...- ( -42.30) >DroPer_CAF1 28769 116 - 1 GUGUGGCAGUGGCAGUGGCAGGCAGCCAUC-AGAGGCAGUUAUGCCUGUCAAGAUGAAUGCCAUAUCAUCGCCGCACCGAAAAUGGUGUCAAAACGUCACCAACGGCGGUUCC---CUUC ....((..(((((..((((((((((((...-...))).....))))))))).(((((........))))))))))((((....(((((.(.....).)))))....))))..)---)... ( -45.20) >consensus G_G_____G_G_CACUCGCAGGCAGGCAUC_GGAGGCAGUUAUGGCUGUCAAGAUGAAUGCCAUAUCAUCGCCGCACCGAAAAUGGUGUCAAAACGUCACCAACGGCGGUUCA___CUU_ .....................(((..((((....(((((......)))))..))))..)))......(((((.((((((....)))))).....(((.....)))))))).......... (-22.08 = -22.17 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:58 2006