Locus 7790

Sequence ID 2L_DroMel_CAF1
Location 21,959,481 – 21,959,594
Length 113
Max. P 0.585043
window12490

overview

Window 0

Location 21,959,481 – 21,959,594
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 86.70
Mean single sequence MFE -35.40
Consensus MFE -22.49
Energy contribution -23.81
Covariance contribution 1.32
Combinations/Pair 1.12
Mean z-score -2.24
Structure conservation index 0.64
SVM decision value 0.10
SVM RNA-class probability 0.585043
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21959481 113 - 22407834
CAGCUUGGCGUGAAAUGUCCGAAGGAAUUACUUGAGCCGUUGUCACAAUUGAUGAAUGAGCAUUAAA-UGUGGCAUUUGGUUGAAGGUUUGGGCUGGAUCGAGUUUC------AGAUGAA
(((((..((........(((...)))....(((.(((((.(((((((.((((((......)))))).-)))))))..))))).)))).)..))))).(((.......------.)))... ( -34.30)
>DroSec_CAF1 10565 113 - 1
CAGCUUGGCGUGAAAUGUCCGAAGGAAUUACUUGAGCCGUUGUCACAAUUGAUGAAUGAGCAUUAAA-UGUGGCAUUUGGUUGAGGGUUUGGGCUGGAUCGAGUUUC------AGCUGAA
(((((.(((.(((...(((((((.......(((.(((((.(((((((.((((((......)))))).-)))))))..))))).))).)))))))....))).)))..------))))).. ( -37.90)
>DroSim_CAF1 13275 113 - 1
CAGCUUGGCGUGAAAUGUCCGAAGGAAUUACUUGAGCCGUUGUCACAAUUGAUGAAUGAGCAUUAAA-UGUGGCAUUUGGUUGAGGGUUUGGGCUGGAUCGAGUUUC------AGCUGAA
(((((.(((.(((...(((((((.......(((.(((((.(((((((.((((((......)))))).-)))))))..))))).))).)))))))....))).)))..------))))).. ( -37.90)
>DroEre_CAF1 11433 112 - 1
CAGUUUGGCGUGAAAUGUCCGAAGGAAUUACUUGAGCCGUUGUCACAAUUGAUGAAUGAGCAGUA-C-UGUGGCAUGUGGUUGUGGGUUUGGGCUGGAUCGAGUUUC------UGCCGAA
...(((((((.(((((((((.(((......))).((((....(((((((((....(((.(((...-.-)))..))).))))))))).....))))))))...)))))------))))))) ( -31.80)
>DroAna_CAF1 15177 111 - 1
CAGUUUGGCGUGAAAUGUCCGAGGAAAUUACUCGAGCCGUUGUCACAAUUGAUGAACGAGCCGCAAAUUGUGGCAUGUGAU---------GGUGUGGAUCGUGUUUCAUUUUUAGCCAAA
...((((((((((((((((((((.......)))....((..((((((.(((.....)))(((((.....))))).))))))---------..)).))))...))))))).....)))))) ( -35.10)
>consensus
CAGCUUGGCGUGAAAUGUCCGAAGGAAUUACUUGAGCCGUUGUCACAAUUGAUGAAUGAGCAUUAAA_UGUGGCAUUUGGUUGAGGGUUUGGGCUGGAUCGAGUUUC______AGCUGAA
....(((((..((((((((((.........(((.((((..(((((((..(((((......)))))...)))))))...)))).)))........)))))...))))).......))))). (-22.49 = -23.81 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:57 2006